RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ZNF805Q5CZA5 627 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 FAM72AQ5TYM5 149 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 SFMBT2Q5VUG0 894 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 FAM72DQ6L9T8 149 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 PPP1R2P3Q6NXS1 205 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 RBM43Q6ZSC3 357 aaKnown RBP17.81■□□□□ 0.44
COL7A1-206ENST00000466591 TMC6Q7Z403 805 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 FAM72BQ86X60 149 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 C1QTNF7Q9BXJ2 289 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 NDFIP2Q9NV92 336 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 ZFR2Q9UPR6 939 aaKnown RBP17.81■□□□□ 0.44
COL7A1-206ENST00000466591 FADS3Q9Y5Q0 445 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 KNL1Q8NG31 2342 aa17.81■□□□□ 0.44
COL7A1-206ENST00000466591 CABIN1Q9Y6J0 2220 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 CXorf51AA0A1B0GTR3 108 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 TMCO5BA8MYB1 307 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 DAPK3O43293 454 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 CCP110O43303 1012 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 KDELR3O43731 214 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 DGKAP23743 735 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 GKP32189 559 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 RABIFP47224 123 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ZNF143P52747 638 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-206ENST00000466591 THOP1P52888 689 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 CLDN6P56747 220 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 TPI1P60174 286 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 HNRNPKP61978 463 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL7A1-206ENST00000466591 E2F1Q01094 437 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 SEMG2Q02383 582 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 TARDBPQ13148 414 aaKnown RBP eCLIP17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ZNF211Q13398 564 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-206ENST00000466591 COL28A1Q2UY09 1125 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ZNF542PQ5EBM4 170 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ATXN7L2Q5T6C5 722 aaPredicted RBP17.8■□□□□ 0.44
COL7A1-206ENST00000466591 GCNT7Q6ZNI0 430 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 TTC7BQ86TV6 843 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 RTL3Q8N8U3 475 aaKnown RBP17.8■□□□□ 0.44
COL7A1-206ENST00000466591 CXorf40AQ8TE69 158 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 KLHL32Q96NJ5 620 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ERGIC2Q96RQ1 377 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ABCG4Q9H172 646 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 ZNF212Q9UDV6 495 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 CLCA2Q9UQC9 943 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 HS3ST3A1Q9Y663 406 aa17.8■□□□□ 0.44
COL7A1-206ENST00000466591 AKAP13Q12802 2813 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 IGLON5A6NGN9 336 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 SMTNL1A8MU46 457 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 C10orf142B7Z368 130 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 AP1G1O43747 822 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 ZNF821O75541 412 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-206ENST00000466591 TMCC1O94876 653 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 DUSP3P51452 185 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-206ENST00000466591 AIF1P55008 147 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 GSCP56915 257 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-206ENST00000466591 PDE1CQ14123 709 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-206ENST00000466591 MYLK3Q32MK0 819 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 TMEM259Q4ZIN3 620 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 MANEALQ5VSG8 457 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 GDPD4Q6W3E5 623 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 KYAT3Q6YP21 454 aaKnown RBP17.79■□□□□ 0.44
COL7A1-206ENST00000466591 LRRC69Q6ZNQ3 347 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 MON1BQ7L1V2 547 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 NLRP14Q86W24 1093 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 PARGQ86W56 976 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 PLPP6Q8IY26 295 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 OR4C6Q8NH72 309 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 CASKIN2Q8WXE0 1202 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 CENPIQ92674 756 aaPredicted RBP17.79■□□□□ 0.44
COL7A1-206ENST00000466591 CNPY3Q9BT09 278 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 DUSP23Q9BVJ7 150 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 GPSM3Q9Y4H4 160 aa17.79■□□□□ 0.44
COL7A1-206ENST00000466591 EIF4E1BA6NMX2 242 aaKnown RBP17.78■□□□□ 0.44
COL7A1-206ENST00000466591 RNF103O00237 685 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 TRIM38O00635 465 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 FGF10O15520 208 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PIAS2O75928 621 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PSMA2P25787 234 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 YBEYP58557 167 aaPredicted RBP17.78■□□□□ 0.44
COL7A1-206ENST00000466591 TYRO3Q06418 890 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PTP4A2Q12974 167 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PTK2BQ14289 1009 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 ASIC2Q16515 512 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PARP15Q460N3 678 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 ACAD10Q6JQN1 1059 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 ABI3BPQ7Z7G0 1075 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PYROXD2Q8N2H3 581 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 IFT43Q96FT9 208 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PARVAQ9NVD7 372 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 UCKL1Q9NWZ5 548 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 DKK4Q9UBT3 224 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 ITM2BQ9Y287 266 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 PLXNB3Q9ULL4 1909 aa17.78■□□□□ 0.44
COL7A1-206ENST00000466591 ASPMQ8IZT6 3477 aa17.77■□□□□ 0.44
COL7A1-206ENST00000466591 DOCK4Q8N1I0 1966 aa17.77■□□□□ 0.44
COL7A1-206ENST00000466591 RASA4BC9J798 803 aa17.77■□□□□ 0.44
COL7A1-206ENST00000466591 RRP8O43159 456 aaKnown RBP17.77■□□□□ 0.44
COL7A1-206ENST00000466591 RASA4O43374 803 aa17.77■□□□□ 0.44
COL7A1-206ENST00000466591 TM7SF2O76062 418 aa17.77■□□□□ 0.44
COL7A1-206ENST00000466591 RNF8O76064 485 aa17.77■□□□□ 0.44
COL7A1-206ENST00000466591 ACP1P24666 158 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms