RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 NDFIP2Q9NV92 336 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 FZD4Q9ULV1 537 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 ADGRG1Q9Y653 693 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 ALG6Q9Y672 507 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 DUSP10Q9Y6W6 482 aa18.07■□□□□ 0.48
COL7A1-205ENST00000465238 NYNRINQ9P2P1 1898 aaKnown RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 LRRC72A6NJI9 287 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 TTC34A8MYJ7 566 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 MID1O15344 667 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 IGHV4-34P06331 123 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 TNNT1P13805 278 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 ERCC2P18074 760 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 YBEYP58557 167 aaPredicted RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 RACK1P63244 317 aaKnown RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 POLD3Q15054 466 aaPredicted RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 PDK2Q15119 407 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 IFI16Q16666 785 aaKnown RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 ODF2Q5BJF6 829 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 C11orf63Q6NUN7 778 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 POLNQ7Z5Q5 900 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 ADAT2Q7Z6V5 191 aaKnown RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 DAAM2Q86T65 1068 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 SLCO6A1Q86UG4 719 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 ZNF354CQ86Y25 554 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 MMAAQ8IVH4 418 aaKnown RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 RHOT1Q8IXI2 618 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 DCAF4L2Q8NA75 395 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 TPCN2Q8NHX9 752 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 RPL10LQ96L21 214 aaKnown RBP18.06■□□□□ 0.48
COL7A1-205ENST00000465238 OMDQ99983 421 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 ORAI3Q9BRQ5 295 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 SLCO3A1Q9UIG8 710 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 SALL4Q9UJQ4 1053 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 HPCAL4Q9UM19 191 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 HYOU1Q9Y4L1 999 aa18.06■□□□□ 0.48
COL7A1-205ENST00000465238 PTPRBP23467 1997 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CHD5Q8TDI0 1954 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 A0A1W2PP55 124 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 A0A1W2PPC4 97 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 FAM47DPA6NHR8 397 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CBX4O00257 560 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 DFNA5O60443 496 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 RNASEH2AO75792 299 aaKnown RBP18.05■□□□□ 0.48
COL7A1-205ENST00000465238 SLC8A1P32418 973 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CTSKP43235 329 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CCT8P50990 548 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CCZ1BP86790 482 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CCZ1P86791 482 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-205ENST00000465238 LRRC38Q5VT99 294 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 UMODL1-AS1Q8N2C9 162 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 OR2T34Q8NGX1 318 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 ARHGEF2Q92974 986 aaKnown RBP18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CSPG4P5Q96PW8 444 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 FAM129BQ96TA1 746 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 PSMB7Q99436 277 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 CALN1Q9BXU9 219 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 ACE2Q9BYF1 805 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-205ENST00000465238 NEUROG2Q9H2A3 272 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 RCOR3Q9P2K3 495 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-205ENST00000465238 SERGEFQ9UGK8 458 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 VPS51Q9UID3 782 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 PLXNA2O75051 1894 aa18.05■□□□□ 0.48
COL7A1-205ENST00000465238 TP53BP1Q12888 1972 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-205ENST00000465238 PLXNB3Q9ULL4 1909 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 MACROD2A1Z1Q3 448 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 VILLO15195 856 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 PCDHGA12O60330 932 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 SNAP91O60641 907 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 ADH1BP00325 375 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 CCDC175P0C221 793 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 C5AR1P21730 350 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 AMPD1P23109 780 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 ACVRL1P37023 503 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 GRK6P43250 576 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 STK19P49842 368 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-205ENST00000465238 NDST2P52849 883 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 C21orf59P57076 290 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 SLC20A2Q08357 652 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 DPYSQ14117 519 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 ELAVL3Q14576 367 aaKnown RBP18.04■□□□□ 0.48
COL7A1-205ENST00000465238 PARP15Q460N3 678 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 ACCSLQ4AC99 568 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 RETSATQ6NUM9 610 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 NCEH1Q6PIU2 408 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 LAYNQ6UX15 382 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 CCNI2Q6ZMN8 369 aaPredicted RBP18.04■□□□□ 0.48
COL7A1-205ENST00000465238 FAM71BQ8TC56 605 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 KIAA1524Q8TCG1 905 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 PTPRN2Q92932 1015 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 SKA1Q96BD8 255 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 TSGA10Q9BZW7 698 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 GOLPH3Q9H4A6 298 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 KLHL11Q9NVR0 708 aa18.04■□□□□ 0.48
COL7A1-205ENST00000465238 DDX56Q9NY93 547 aaKnown RBP18.04■□□□□ 0.48
COL7A1-205ENST00000465238 TPX2Q9ULW0 747 aaKnown RBP18.04■□□□□ 0.48
COL7A1-205ENST00000465238 LRRD1A4D1F6 860 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 RASA4BC9J798 803 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 H0Y8X5 98 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 RASA4O43374 803 aa18.03■□□□□ 0.48
COL7A1-205ENST00000465238 KRT86O43790 486 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms