RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	BOC	Q9BWV1	1114 aa		11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	NAA15	Q9BXJ9	866 aa	Known RBP	11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	TCEAL2	Q9H3H9	227 aa	Predicted RBP	11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	PPARGC1A	Q9UBK2	798 aa	Known RBP	11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	DNAJC12	Q9UKB3	198 aa		11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	STAP1	Q9ULZ2	295 aa		11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	ITM2B	Q9Y287	266 aa		11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	FCF1	Q9Y324	198 aa	Known RBP	11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	ENTPD2	Q9Y5L3	495 aa		11.37	□□□□□ -0.59
PTPN7-204	ENST00000462815	TRPM6	Q9BX84	2022 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	AREL1	O15033	823 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	AQP9	O43315	295 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	GCAT	O75600	419 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	F9	P00740	461 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	CYP11B1	P15538	503 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	ACVRL1	P37023	503 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	RABIF	P47224	123 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	RHD	Q02161	417 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	NRG1	Q02297	640 aa	Predicted RBP	11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	GNA12	Q03113	381 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	CCDC15	Q0P6D6	951 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	C2CD6	Q53TS8	623 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	PERM1	Q5SV97	790 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	ACBD5	Q5T8D3	534 aa	Predicted RBP	11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	ARC	Q7LC44	396 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	PLPP6	Q8IY26	295 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	RBFA	Q8N0V3	343 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	DENND6B	Q8NEG7	585 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	MAPK15	Q8TD08	544 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	ISG20	Q96AZ6	181 aa	Known RBP	11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	CENPT	Q96BT3	561 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	ATXN7L3B	Q96GX2	97 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	VCPIP1	Q96JH7	1222 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	SLC46A1	Q96NT5	459 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	HEPH	Q9BQS7	1158 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	DPH1	Q9BZG8	443 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	DYRK4	Q9NR20	520 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	SALL4	Q9UJQ4	1053 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	SATB2	Q9UPW6	733 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	PCDHGA8	Q9Y5G5	932 aa		11.36	□□□□□ -0.59
PTPN7-204	ENST00000462815	LRP4	O75096	1905 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	FAM170A	A1A519	330 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	NEMP2	A6NFY4	417 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	IGLON5	A6NGN9	336 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	CYSRT1	A8MQ03	144 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	TPP1	O14773	563 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	FGFR1OP	O95684	399 aa	Known RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	KRT9	P35527	623 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	IGFALS	P35858	605 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	DUSP3	P51452	185 aa	Predicted RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	UCN	P55089	124 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	RNASE9	P60153	205 aa	Known RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	SLC20A2	Q08357	652 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	PDE1C	Q14123	709 aa	Predicted RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	CDKN3	Q16667	212 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	DEFB133	Q30KQ1	61 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	FAM102A	Q5T9C2	384 aa	Predicted RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	ARHGAP40	Q5TG30	622 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	RETSAT	Q6NUM9	610 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	LRRC31	Q6UY01	552 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	EFL1	Q7Z2Z2	1120 aa	Known RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	CLEC14A	Q86T13	490 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	NOP9	Q86U38	636 aa	Known RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	ZSCAN30	Q86W11	494 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	FAM131B	Q86XD5	332 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	SLC35F3	Q8IY50	421 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	TMEM35B	Q8NCS4	154 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	KCNE4	Q8WWG9	221 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	ARHGEF2	Q92974	986 aa	Known RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	C18orf8	Q96DM3	657 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	FEM1C	Q96JP0	617 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	TBATA	Q96M53	351 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	CFAP57	Q96MR6	1250 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	LRRC61	Q9BV99	259 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	MAGEB5	Q9BZ81	275 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	ZYG11B	Q9C0D3	744 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	CLPB	Q9H078	707 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	OSBPL2	Q9H1P3	480 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	ATP13A1	Q9HD20	1204 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	KIAA1468	Q9P260	1216 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	FHOD1	Q9Y613	1164 aa		11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	SPEN	Q96T58	3664 aa	Known RBP	11.35	□□□□□ -0.59
PTPN7-204	ENST00000462815	COL6A6	A6NMZ7	2263 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	C16orf96	A6NNT2	1141 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	FAM72C	H0Y354	149 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815		K7ENP7	123 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	NTN3	O00634	580 aa	Predicted RBP	11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	RIOK3	O14730	519 aa	Known RBP	11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	KLK10	O43240	276 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	TSPAN6	O43657	245 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	SRGAP2	O75044	1071 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	JUND	P17535	347 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	RECQL	P46063	649 aa	Predicted RBP	11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	SNX16	P57768	344 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	NOMO3	P69849	1222 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	VAC14	Q08AM6	782 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	HS1BP3	Q53T59	392 aa		11.34	□□□□□ -0.59
PTPN7-204	ENST00000462815	C3orf38	Q5JPI3	329 aa		11.34	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms