RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 PPP1R2P1Q96PQ5 205 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 NDNQ99608 321 aa13.83□□□□□ -0.2
CLK3-203ENST00000454830 ZNF840PA6NDX5 716 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 CLTBP09497 229 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 RALBP11234 206 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 OXCT1P55809 520 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SLC8B1Q6J4K2 584 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 NEPROQ6NW34 567 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 TIFABQ6ZNK6 161 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 WDR75Q8IWA0 830 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 CARNMT1Q8N4J0 409 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 PPP1R36Q96LQ0 422 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 KIFC1Q9BW19 673 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 CINPQ9BW66 212 aaPredicted RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 VN1R3Q9BXE9 311 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SHCBP1LQ9BZQ2 653 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 POLR1EQ9GZS1 481 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 RUVBL2Q9Y230 463 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 HSPA4LO95757 839 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SLC6A4P31645 630 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 HNRNPH1P31943 449 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 ALDH18A1P54886 795 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 UGP2Q16851 508 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 PTPRDP23468 1912 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 NLRC5Q86WI3 1866 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 DNAJC8O75937 253 aaPredicted RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 PARNO95453 639 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 AHSGP02765 367 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SOD2P04179 222 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 NQO1P15559 274 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 CPA2P48052 419 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SLC1A6P48664 564 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SMAD3P84022 425 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 PARP15Q460N3 678 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 ANKRD33Q7Z3H0 272 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 ALYREFQ86V81 257 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 PDZD8Q8NEN9 1154 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 KCTD4Q8WVF5 259 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 CDK5RAP1Q96SZ6 601 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 CWH43Q9H720 699 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 SPG21Q9NZD8 308 aa13.82□□□□□ -0.2
CLK3-203ENST00000454830 HBS1LQ9Y450 684 aaKnown RBP13.82□□□□□ -0.2
CLK3-203ENST00000454830 FAM95CA0A1B0GW59 222 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 HEATR9A2RTY3 570 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 GLDCP23378 1020 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 EPHB3P54753 998 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 MXRA7P84157 204 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 GNA12Q03113 381 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 TMCO4Q5TGY1 634 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 TTC7BQ86TV6 843 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 SPNS2Q8IVW8 549 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 SAGE1Q9NXZ1 904 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 IL37Q9NZH6 218 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 KCTD3Q9Y597 815 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 FAM92AA1XBS5 289 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 H0Y626 953 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 ITM2AO43736 263 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 TBC1D4O60343 1298 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 CXCL10P02778 98 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 CSE1LP55060 971 aaKnown RBP13.81□□□□□ -0.2
CLK3-203ENST00000454830 SERINC3Q13530 473 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 DENND5AQ6IQ26 1287 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 LINGO4Q6UY18 593 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 DNAJB7Q7Z6W7 309 aaPredicted RBP13.81□□□□□ -0.2
CLK3-203ENST00000454830 CCNYL1Q8N7R7 359 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 RHOJQ9H4E5 214 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 NMRAL1Q9HBL8 299 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 MRPL17Q9NRX2 175 aaKnown RBP13.81□□□□□ -0.2
CLK3-203ENST00000454830 NSMCE4AQ9NXX6 385 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 FBXO5Q9UKT4 447 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 OR51F1A6NGY5 319 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 DIAPH2O60879 1101 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 CKMP06732 381 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 SERPINF2P08697 491 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 SLC1A2P43004 574 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 NRG1Q02297 640 aaPredicted RBP13.81□□□□□ -0.2
CLK3-203ENST00000454830 RING1Q06587 406 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 IL10RBQ08334 325 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 PTPRCAPQ14761 206 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 RANBP10Q6VN20 620 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 CNPY4Q8N129 248 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 RYBPQ8N488 228 aaPredicted RBP13.81□□□□□ -0.2
CLK3-203ENST00000454830 HDAC10Q969S8 669 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 MOCOSQ96EN8 888 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 IMP4Q96G21 291 aaKnown RBP13.81□□□□□ -0.2
CLK3-203ENST00000454830 RNF38Q9H0F5 515 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 THAP1Q9NVV9 213 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 EMCNQ9ULC0 261 aa13.81□□□□□ -0.2
CLK3-203ENST00000454830 UNC5CO95185 931 aa13.8□□□□□ -0.2
CLK3-203ENST00000454830 STMN1P16949 149 aa13.8□□□□□ -0.2
CLK3-203ENST00000454830 CD151P48509 253 aa13.8□□□□□ -0.2
CLK3-203ENST00000454830 YBEYP58557 167 aaPredicted RBP13.8□□□□□ -0.2
CLK3-203ENST00000454830 EFHBQ8N7U6 833 aa13.8□□□□□ -0.2
CLK3-203ENST00000454830 ARL14EPQ8N8R7 260 aaPredicted RBP13.8□□□□□ -0.2
CLK3-203ENST00000454830 GABPB2Q8TAK5 448 aaPredicted RBP13.8□□□□□ -0.2
CLK3-203ENST00000454830 SUDS3Q9H7L9 328 aaPredicted RBP13.8□□□□□ -0.2
CLK3-203ENST00000454830 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLK3-203ENST00000454830 SIRPGQ9P1W8 387 aa13.8□□□□□ -0.2
CLK3-203ENST00000454830 COPG2Q9UBF2 871 aa13.8□□□□□ -0.2
CLK3-203ENST00000454830 UBA2Q9UBT2 640 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms