RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 LSM12Q3MHD2 195 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CCDC184Q52MB2 194 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 GHDCQ8N2G8 530 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CD101Q93033 1021 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PGAP3Q96FM1 320 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TCEAL7Q9BRU2 100 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 FNDC11Q9BVV2 318 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SMURF1Q9HCE7 757 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SPAG4Q9NPE6 437 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 XDHP47989 1333 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 HHLA1C9JL84 531 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ZBTB14O43829 449 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CST8O60676 142 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 MTA2O94776 668 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 NADKO95544 446 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 HK1P19367 917 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ATP4AP20648 1035 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SLC6A2P23975 617 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PRCPP42785 496 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 MRPS22P82650 360 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 NRF1Q16656 503 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 C9orf43Q8TAL5 461 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TBC1D15Q8TC07 691 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF594Q96JF6 807 aaPredicted RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 MAN2B2Q9Y2E5 1009 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 OR10H1Q9Y4A9 318 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CENPBD1B2RD01 187 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PIGNO95427 931 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 OR56A5P0C7T3 313 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 PCSK2P16519 638 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 ST3GAL4Q11206 333 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SGCGQ13326 291 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 KYAT3Q6YP21 454 aaKnown RBP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 EEPD1Q7L9B9 569 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 SLC26A11Q86WA9 606 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 KATNAL2Q8IYT4 538 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CLPTM1LQ96KA5 538 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 FAM83DQ9H4H8 585 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.02□□□□□ -0.97
NIPBL-202ENST00000448238 CCDC167Q9P0B6 97 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 USP18Q9UMW8 372 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 TAF6LQ9Y6J9 622 aa9.02□□□□□ -0.97
NIPBL-202ENST00000448238 AFF2P51816 1311 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ANKDD1BA6NHY2 528 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CASC3O15234 703 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ALDH4A1P30038 563 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 PGM2L1Q6PCE3 622 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CYP2U1Q7Z449 544 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ADGRG6Q86SQ4 1221 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 IPCEF1Q8WWN9 437 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF649Q9BS31 505 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NDOR1Q9UHB4 597 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TOP2AP11388 1531 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 PDXKO00764 312 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 POLR1CO15160 346 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 IFNA1P01562 189 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 FAM228BP0C875 321 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NCOA4Q13772 614 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NAB2Q15742 525 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SNAPC1Q16533 368 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 NOL9Q5SY16 702 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 GRTP1Q5TC63 336 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CRTC3Q6UUV7 619 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CRELD2Q6UXH1 353 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MOB1BQ7L9L4 216 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SCGB1C1Q8TD33 95 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ASB15Q8WXK1 588 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZSWIM3Q96MP5 696 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 LPIN3Q9BQK8 851 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 I3L521 148 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TLX3O43711 291 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SCAF4O95104 1147 aaKnown RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SEC24BO95487 1268 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 DNAJB2P25686 324 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CDH5P33151 784 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 UBXN2AP68543 259 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 GRK1Q15835 563 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CBWD3Q5JTY5 395 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 SPDYCQ5MJ68 293 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 CBWD5Q5RIA9 395 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 C10orf120Q5SQS8 335 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF574Q6ZN55 896 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 COMTD1Q86VU5 262 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZNF808Q8N4W9 903 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 C12orf45Q8N5I9 185 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 C11orf65Q8NCR3 313 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MFSD8Q8NHS3 518 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 RAD54LQ92698 747 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ZIM3Q96PE6 472 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 BSDC1Q9NW68 430 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TRPS1Q9UHF7 1281 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 DOCK10Q96BY6 2186 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 RARGP13631 454 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 PAX3P23760 479 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 EPHB2P29323 1055 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 ASMTP46597 345 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 TLE3Q04726 772 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 MAD2L1BPQ15013 274 aaPredicted RBP9.01□□□□□ -0.97
NIPBL-202ENST00000448238 DLG2Q15700 870 aa9.01□□□□□ -0.97
NIPBL-202ENST00000448238 FAXCQ5TGI0 409 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms