RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 RAB10P61026 200 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 DLG1Q12959 904 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 CNGA3Q16281 694 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 LSM12Q3MHD2 195 aaKnown RBP16.22■□□□□ 0.19
SHQ1-202ENST00000444040 C14orf80Q86SX3 495 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 THEM5Q8N1Q8 247 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 PYDC1Q8WXC3 89 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 GATA6Q92908 595 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 UPF3AQ9H1J1 476 aaKnown RBP16.22■□□□□ 0.19
SHQ1-202ENST00000444040 NUDT5Q9UKK9 219 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 INPP5FQ9Y2H2 1132 aa16.22■□□□□ 0.19
SHQ1-202ENST00000444040 YY1P25490 414 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 SLC1A2P43004 574 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 MTTPP55157 894 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 TSPY1Q01534 308 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 TBL3Q12788 808 aaKnown RBP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 TSTD2Q5T7W7 516 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 SEL1L3Q68CR1 1132 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 IZUMO2Q6UXV1 221 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 TMC7Q7Z402 723 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 HPS6Q86YV9 775 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 FBXW8Q8N3Y1 598 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 RTL3Q8N8U3 475 aaKnown RBP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 STON2Q8WXE9 905 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 NXNL1Q96CM4 212 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 SCYL1Q96KG9 808 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 XPR1Q9UBH6 696 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 HS3ST4Q9Y661 456 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 PTPRDP23468 1912 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 E9PAM4 449 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 PMPCBO75439 489 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 PAX3P23760 479 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 EPHA3P29320 983 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 GRIK1P39086 918 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 PAPOLAP51003 745 aaKnown RBP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 NSUN2Q08J23 767 aaKnown RBP eCLIP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 PRKAA1Q13131 559 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 TIGD7Q6NT04 549 aaPredicted RBP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 SPATA2LQ8IUW3 424 aaPredicted RBP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 C2CD4AQ8NCU7 369 aaPredicted RBP16.21■□□□□ 0.19
SHQ1-202ENST00000444040 ADAM2Q99965 735 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 ECSITQ9BQ95 431 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 MPP6Q9NZW5 540 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 PATJQ8NI35 1801 aa16.21■□□□□ 0.19
SHQ1-202ENST00000444040 STMN1P16949 149 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 NRG1Q02297 640 aaPredicted RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 DSG1Q02413 1049 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 LPIN1Q14693 890 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 JADE3Q92613 823 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 CCDC124Q96CT7 223 aaKnown RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 UROC1Q96N76 676 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 PPP1R2P1Q96PQ5 205 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 UBE2OQ9C0C9 1292 aaKnown RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 TRPV6Q9H1D0 765 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 ATXN3LQ9H3M9 355 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 ZNF385DQ9H6B1 395 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 OSER1Q9NX31 292 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 PEX11BO96011 259 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 RPLP2P05387 115 aaKnown RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 TYMPP19971 482 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 SP100P23497 879 aaPredicted RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 PIK3R1P27986 724 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 SERPINB5P36952 375 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 CHRNA4P43681 627 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 MLLT6P55198 1093 aaPredicted RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 CDC16Q13042 620 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 GPR162Q16538 588 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 KIAA0930Q6ICG6 404 aaPredicted RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 DHDDSQ86SQ9 333 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 SPATA6LQ8N4H0 392 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 CPSF7Q8N684 471 aaKnown RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 EFCAB3Q8N7B9 438 aa16.2■□□□□ 0.18
SHQ1-202ENST00000444040 NOL6Q9H6R4 1146 aaKnown RBP16.2■□□□□ 0.18
SHQ1-202ENST00000444040 A0A1W2PQH9 124 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 WASH4PA8MWX3 477 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 NEMP1O14524 444 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 ZNF157P51786 506 aaPredicted RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 TAS2R39P59534 338 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 IFNL1Q8IU54 200 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 SLC26A7Q8TE54 656 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 PPP1R36Q96LQ0 422 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 FSD1LQ9BXM9 530 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 NUF2Q9BZD4 464 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 DLGAP2Q9P1A6 1054 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 MOCS2O96007 188 aaPredicted RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 JUNP05412 331 aaKnown RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 OR4Q2P0C623 313 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 THRAP10827 490 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 NKX3-2P78367 333 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 GSTA3Q16772 222 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 TCHHL1Q5QJ38 904 aaPredicted RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 KDELC1Q6UW63 502 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 KDELC2Q7Z4H8 507 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 LRRC49Q8IUZ0 686 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 NYNRINQ9P2P1 1898 aaKnown RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 VTI1BQ9UEU0 232 aa16.19■□□□□ 0.18
SHQ1-202ENST00000444040 IPO11Q9UI26 975 aaKnown RBP16.19■□□□□ 0.18
SHQ1-202ENST00000444040 RGSL1A5PLK6 1076 aa16.18■□□□□ 0.18
SHQ1-202ENST00000444040 SLCO1B7G3V0H7 640 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms