RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 RAD51Q06609 339 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 PAFAH1B3Q15102 231 aaKnown RBP18.94■□□□□ 0.62
SHH-204ENST00000441114 TRIM61Q5EBN2 209 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 LRRC38Q5VT99 294 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 C11orf63Q6NUN7 778 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 RFX6Q8HWS3 928 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 PLPP6Q8IY26 295 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 PQLC3Q8N755 202 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 OR2T34Q8NGX1 318 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.94■□□□□ 0.62
SHH-204ENST00000441114 FAF2Q96CS3 445 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 PPP1R16AQ96I34 528 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 RNF157Q96PX1 679 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 TRIM10Q9UDY6 481 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 GON4LQ3T8J9 2241 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 USP34Q70CQ2 3546 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 ANKRD36A6QL64 1941 aa18.94■□□□□ 0.62
SHH-204ENST00000441114 FAM186AA6NE01 2351 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 PLXNA2O75051 1894 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 MACROD2A1Z1Q3 448 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 C3orf70A6NLC5 250 aaPredicted RBP18.93■□□□□ 0.62
SHH-204ENST00000441114 UGT2B4P06133 528 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 DPP6P42658 865 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 SLC10A7Q0GE19 358 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 KIF5AQ12840 1032 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 LBRQ14739 615 aaKnown RBP18.93■□□□□ 0.62
SHH-204ENST00000441114 LLGL1Q15334 1064 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 DUOXA1Q1HG43 343 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 AGBL4Q5VU57 503 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 ERN2Q76MJ5 926 aaKnown RBP18.93■□□□□ 0.62
SHH-204ENST00000441114 ZCCHC9Q8N567 271 aaKnown RBP18.93■□□□□ 0.62
SHH-204ENST00000441114 TSEN2Q8NCE0 465 aaKnown RBP18.93■□□□□ 0.62
SHH-204ENST00000441114 LRRN4Q8WUT4 740 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 KLHL32Q96NJ5 620 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 PCED1AQ9H1Q7 454 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 FSCN3Q9NQT6 498 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 RXFP3Q9NSD7 469 aa18.93■□□□□ 0.62
SHH-204ENST00000441114 ZBTB32Q9Y2Y4 487 aaPredicted RBP18.93■□□□□ 0.62
SHH-204ENST00000441114 PI4KAP42356 2102 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 BTNL10A8MVZ5 291 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 SLC7A4O43246 635 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 PSTPIP1O43586 416 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 PLRG1O43660 514 aaKnown RBP18.92■□□□□ 0.62
SHH-204ENST00000441114 GDF9O60383 454 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 MAFKO60675 156 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 GNSP15586 552 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 RGRP47804 291 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 MARCKSL1P49006 195 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 DYNLT1P63172 113 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 IRX4P78413 519 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 GBE1Q04446 702 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 CCDC15Q0P6D6 951 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 PIP5KL1Q5T9C9 394 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 TMCO4Q5TGY1 634 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 FBXL19Q6PCT2 694 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 MFSD7Q6UXD7 560 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 GDPD4Q6W3E5 623 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 TXLNBQ8N3L3 684 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 NSMCE1Q8WV22 266 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 DNASE2BQ8WZ79 361 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 NUSAP1Q9BXS6 441 aaKnown RBP18.92■□□□□ 0.62
SHH-204ENST00000441114 HEY1Q9Y5J3 304 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 DOCK9Q9BZ29 2069 aa18.92■□□□□ 0.62
SHH-204ENST00000441114 RIF1Q5UIP0 2472 aaKnown RBP18.92■□□□□ 0.62
SHH-204ENST00000441114 EP300Q09472 2414 aaPredicted RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 TTC24A2A3L6 582 aaPredicted RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 APOL1O14791 398 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 PIGNO95427 931 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 IGHV4-34P06331 123 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 ITGB7P26010 798 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 MAT2AP31153 395 aaKnown RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 NEK3P51956 506 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 TAS2R38P59533 333 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 PPP2CBP62714 309 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 PPP2CAP67775 309 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 LMNB2Q03252 620 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 ZNF235Q14590 738 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 RFTN1Q14699 578 aaPredicted RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 ZNF805Q5CZA5 627 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 PEAR1Q5VY43 1037 aaPredicted RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 KAZNQ674X7 775 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 PARS2Q7L3T8 475 aaKnown RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 SRLQ86TD4 932 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 CCDC50Q8IVM0 306 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 LRRC8AQ8IWT6 810 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 CCDC112Q8NEF3 446 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 CEP76Q8TAP6 659 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 KIAA1524Q8TCG1 905 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 KRT35Q92764 455 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 LRIG1Q96JA1 1093 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 CALR3Q96L12 384 aaKnown RBP18.91■□□□□ 0.62
SHH-204ENST00000441114 ZNF599Q96NL3 588 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 OSBPL1AQ9BXW6 950 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 HDAC8Q9BY41 377 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 SUSD2Q9UGT4 822 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 SEPT3Q9UH03 358 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.91■□□□□ 0.62
SHH-204ENST00000441114 SLCO1B1Q9Y6L6 691 aa18.91■□□□□ 0.62
SHH-204ENST00000441114 PTPRZ1P23471 2315 aaPredicted RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms