RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 MRPS6P82932 125 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 CYLC2Q14093 348 aaPredicted RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ZFP1Q6P2D0 407 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 TMC7Q7Z402 723 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 SERINC5Q86VE9 423 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 TMEM126BQ8IUX1 230 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 LSMEM2Q8N112 164 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 MARVELD2Q8N4S9 558 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ARRDC4Q8NCT1 418 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 SLAIN1Q8ND83 568 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 MOCOSQ96EN8 888 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 DCUN1D1Q96GG9 259 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 CRTAC1Q9NQ79 661 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 CNGB3Q9NQW8 809 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ZDHHC2Q9UIJ5 367 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 PACSIN3Q9UKS6 424 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 TRIM17Q9Y577 477 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 C15orf38-AP3S2A0A0A6YYH1 394 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 GOLGA8TH3BQL2 631 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 PHGDHO43175 533 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 DENRO43583 198 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 DDHD2O94830 711 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 COL6A2P12110 1019 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 TFEBP19484 476 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ACLYP53396 1101 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 USP10Q14694 798 aaKnown RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ARL13BQ3SXY8 428 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 GPRIN1Q7Z2K8 1008 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ARPINQ7Z6K5 226 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 CENPLQ8N0S6 344 aaPredicted RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 PGAM4Q8N0Y7 254 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 KCTD4Q8WVF5 259 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 RCN3Q96D15 328 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 HAPLN3Q96S86 360 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 NUF2Q9BZD4 464 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 HMX1Q9NP08 348 aaPredicted RBP16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 ACSS2Q9NR19 701 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 DDIT4Q9NX09 232 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 CDYLQ9Y232 598 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 IPPQ9Y573 584 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 PTCH2Q9Y6C5 1203 aa16.62■□□□□ 0.25
CLCNKA-203ENST00000439316 SHROOM3Q8TF72 1996 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 TXNDC9O14530 226 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 PSMD3O43242 534 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 CACNG3O60359 315 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 CTSHP09668 335 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 SMIM18P0DKX4 95 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 XRCC1P18887 633 aaPredicted RBP16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 GABRB3P28472 473 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 RABGGTBP53611 331 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 NAGLUP54802 743 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 DYNC1I2Q13409 638 aaKnown RBP16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 SLC12A1Q13621 1099 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 ADGRE1Q14246 886 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 FLOT2Q14254 428 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 PRPSAP1Q14558 356 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 TLR1Q15399 786 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 RAB41Q5JT25 222 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 LHX8Q68G74 356 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 LRRC8EQ6NSJ5 796 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 LINC00523Q86TU6 105 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 FAM35AQ86V20 835 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 CNTN4Q8IWV2 1026 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 SMG8Q8ND04 991 aaKnown RBP16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 SCYL1Q96KG9 808 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 GCNAQ96QF7 691 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 CDRT15Q96T59 188 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 EPAS1Q99814 870 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 SMOQ99835 787 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 COLEC11Q9BWP8 271 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 EPB41L1Q9H4G0 881 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 RRN3Q9NYV6 651 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 RIMS3Q9UJD0 308 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 COMMD3-BMI1R4GMX3 469 aa16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 COL4A4P53420 1690 aaPredicted RBP16.61■□□□□ 0.25
CLCNKA-203ENST00000439316 SMIM31A0A1B0GVY4 71 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 M0QZ92 97 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 TADA2AO75478 443 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 NCAM1P13591 858 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 GLRBP48167 497 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 PRMT2P55345 433 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 CEACAM7Q14002 265 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 RFTN1Q14699 578 aaPredicted RBP16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 BHLHA9Q7RTU4 235 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 TICAM1Q8IUC6 712 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 FSTL5Q8N475 847 aaPredicted RBP16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 ZMIZ2Q8NF64 920 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 PPP1R36Q96LQ0 422 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 CATSPER2Q96P56 530 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 TSGA13Q96PP4 275 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 ZBTB26Q9HCK0 441 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 UBP1Q9NZI7 540 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 RUVBL2Q9Y230 463 aaKnown RBP16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 SNX10Q9Y5X0 201 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 PTGESO14684 152 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 DLX3O60479 287 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 AP1G2O75843 785 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 F9P00740 461 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 JCHAINP01591 159 aa16.6■□□□□ 0.25
CLCNKA-203ENST00000439316 CHRNA1P02708 482 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms