RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 MPPE1Q53F39 396 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 ACBD5Q5T8D3 534 aaPredicted RBP12.42□□□□□ -0.42
PTPRF-208ENST00000437607 KAZNQ674X7 775 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 IL27RAQ6UWB1 636 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 TMPRSS7Q7RTY8 843 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 CHSY1Q86X52 802 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 RFX6Q8HWS3 928 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 RASGEF1CQ8N431 466 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.42□□□□□ -0.42
PTPRF-208ENST00000437607 CEP112Q8N8E3 955 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 ACTRT1Q8TDG2 376 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 HAPLN3Q96S86 360 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 ORAI3Q9BRQ5 295 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 OSBPL8Q9BZF1 889 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 PCED1AQ9H1Q7 454 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 SNX11Q9Y5W9 270 aa12.42□□□□□ -0.42
PTPRF-208ENST00000437607 SETXQ7Z333 2677 aaKnown RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 FLRT2O43155 660 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 CREB3O43889 395 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 PAGE1O75459 146 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 HTR7P34969 479 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 GGCXP38435 758 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 CDKN2BP42772 138 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 RPS14P62263 151 aaKnown RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 EIF4EBP2Q13542 120 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 TFDP2Q14188 446 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 SOWAHCQ53LP3 525 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 AADACL2Q6P093 401 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 LAYNQ6UX15 382 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 CHST9Q7L1S5 443 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 PDZD3Q86UT5 571 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 SLC13A5Q86YT5 568 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 RHBDD1Q8TEB9 315 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 SNX19Q92543 992 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 BIRC7Q96CA5 298 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 TBC1D31Q96DN5 1066 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 MS4A14Q96JA4 679 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 MAK16Q9BXY0 300 aaKnown RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 L2HGDHQ9H9P8 463 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 TM9SF3Q9HD45 589 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 PRSS16Q9NQE7 514 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 TMPRSS4Q9NRS4 437 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 ABCB8Q9NUT2 735 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 SMARCAL1Q9NZC9 954 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 TTC7AQ9ULT0 858 aaPredicted RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 RAXQ9Y2V3 346 aa12.41□□□□□ -0.42
PTPRF-208ENST00000437607 HELZ2Q9BYK8 2649 aaKnown RBP12.41□□□□□ -0.42
PTPRF-208ENST00000437607 ATMQ13315 3056 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CTAGE15A4D2H0 777 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 C3orf70A6NLC5 250 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-208ENST00000437607 GOLGA8CPA6NN73 597 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 KCNU1A8MYU2 1149 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 F5H5T6 163 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 APOL1O14791 398 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 DAPK3O43293 454 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 TJP3O95049 919 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 SEMA4FO95754 770 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 LATS1O95835 1130 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CD48P09326 243 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CTAGE8P0CG41 777 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 L1CAMP32004 1257 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CD70P32970 193 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 ARSEP51690 589 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 AFF3P51826 1226 aaKnown RBP12.4□□□□□ -0.42
PTPRF-208ENST00000437607 DYNLT1P63172 113 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CAMK2BQ13554 666 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 E2F5Q15329 346 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 LLGL1Q15334 1064 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 FNDC3BQ53EP0 1204 aaKnown RBP12.4□□□□□ -0.42
PTPRF-208ENST00000437607 ADGRF1Q5T601 910 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 LRRC31Q6UY01 552 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 RFX8Q6ZV50 586 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CTAGE6Q86UF2 777 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CREG2Q8IUH2 290 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CTAGE4Q8IX94 777 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 PYROXD2Q8N2H3 581 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 WFIKKN2Q8TEU8 576 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 MYO19Q96H55 970 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 LMLNQ96KR4 655 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 CSPG4P5Q96PW8 444 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 DDX50Q9BQ39 737 aaKnown RBP12.4□□□□□ -0.42
PTPRF-208ENST00000437607 HEMGNQ9BXL5 484 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 SIK2Q9H0K1 926 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 OSBPL2Q9H1P3 480 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 MTG2Q9H4K7 406 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 GGA2Q9UJY4 613 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 ANKRD6Q9Y2G4 727 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 HS3ST4Q9Y661 456 aa12.4□□□□□ -0.42
PTPRF-208ENST00000437607 MGAQ8IWI9 3026 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 GOLGA6L7A0A1B0GV03 622 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 TYW5A2RUC4 315 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 E9PAM4 449 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 H0Y8X5 98 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 KRIT1O00522 736 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 FGF10O15520 208 aaPredicted RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 ACSL4O60488 711 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 IGHV4-34P06331 123 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 PABPC1P11940 636 aaKnown RBP12.39□□□□□ -0.43
PTPRF-208ENST00000437607 KRT10P13645 584 aa12.39□□□□□ -0.43
PTPRF-208ENST00000437607 ZFXP17010 805 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms