RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 ELP4Q96EB1 424 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF830Q96NB3 372 aaPredicted RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ADAM2Q99965 735 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ITPAQ9BY32 194 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 PRO3102Q9H379 93 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 BRF2Q9HAW0 419 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ERVK-5Q9HDB9 667 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SEMA4BQ9NPR2 832 aaPredicted RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 RRAGDQ9NQL2 400 aaPredicted RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 THAP1Q9NVV9 213 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 HCFC1R1Q9NWW0 138 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 MGAT4CQ9UBM8 478 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 TRMT112Q9UI30 125 aaKnown RBP4.37□□□□□ -1.71
HMGB3-203ENST00000430118 AMFRQ9UKV5 643 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SARDHQ9UL12 918 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 SNX8Q9Y5X2 465 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 PSAT1Q9Y617 370 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 FAM205AQ6ZU69 1335 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 ADGRA2Q96PE1 1338 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 RTL9Q8NET4 1388 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 LAMB1P07942 1786 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 VCANP13611 3396 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 NUP98P52948 1817 aa4.37□□□□□ -1.71
HMGB3-203ENST00000430118 TRIOBPQ9H2D6 2365 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 SPTBN5Q9NRC6 3674 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 NPIPB15A6NHN6 443 aaPredicted RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 TTC34A8MYJ7 566 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 AP3D1O14617 1153 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 MPPED1O15442 326 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 HTATSF1O43719 755 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 AHCYL1O43865 530 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 VNN1O95497 513 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 FESP07332 822 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 COX7A2P14406 83 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 MYL6BP14649 208 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 LAG3P18627 525 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 GALNSP34059 522 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 GGT5P36269 586 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 OAZ1P54368 228 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 GUCY1B3Q02153 619 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 AIMP2Q13155 320 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 ALKBH1Q13686 389 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 TNFAIP1Q13829 316 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 GLE1Q53GS7 698 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 MFSD4BQ5TF39 518 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 ANKRD16Q6P6B7 361 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 CYP20A1Q6UW02 462 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 TMCO3Q6UWJ1 677 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 SLC39A5Q6ZMH5 540 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 MOB2Q70IA6 237 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 PARS2Q7L3T8 475 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 RRM2BQ7LG56 351 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 GALNT7Q86SF2 657 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 PRPF39Q86UA1 669 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 ULK2Q8IYT8 1036 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 TDHQ8IZJ6 230 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 XAGE5Q8WWM1 108 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 LPIN2Q92539 896 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 FAM120BQ96EK7 910 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 RNFT2Q96EX2 444 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 PTCD3Q96EY7 689 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 CCDC34Q96HJ3 373 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 CFAP53Q96M91 514 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 TEPSINQ96N21 525 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 ASB2Q96Q27 587 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 SNX18Q96RF0 628 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 PRR25Q96S07 402 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 KRTAP4-7Q9BYR0 210 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 PANK3Q9H999 370 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 SFXN1Q9H9B4 322 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 ZCCHC17Q9NP64 241 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 CNOT11Q9UKZ1 510 aaKnown RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 CAMK2AQ9UQM7 478 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 NUDCQ9Y266 331 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 TMEM5Q9Y2B1 443 aa4.36□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF646O15015 1829 aaPredicted RBP4.36□□□□□ -1.71
HMGB3-203ENST00000430118 A0A1W2PQM1 296 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 NPIPB13A6NJU9 1138 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 NPIPB5A8MRT5 1133 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 NPIPB4C9JG80 1138 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 DKC1O60832 514 aaKnown RBP eCLIP4.35□□□□□ -1.71
HMGB3-203ENST00000430118 CHRM4P08173 479 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 CSH1P0DML2 217 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 CSH2P0DML3 217 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 NR2F1P10589 423 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 PORP16435 677 aaPredicted RBP4.35□□□□□ -1.71
HMGB3-203ENST00000430118 ZFXP17010 805 aaPredicted RBP4.35□□□□□ -1.71
HMGB3-203ENST00000430118 RRM1P23921 792 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 SLC8A1P32418 973 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 KRT20P35900 424 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 GJC1P36383 396 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 SELENOPP49908 381 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 CLCN2P51788 898 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 JAK3P52333 1124 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 RPS3AP61247 264 aaKnown RBP4.35□□□□□ -1.71
HMGB3-203ENST00000430118 FAM189BP81408 668 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 CREB5Q02930 508 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 CHAF1BQ13112 559 aa4.35□□□□□ -1.71
HMGB3-203ENST00000430118 EIF2B5Q13144 721 aaKnown RBP4.35□□□□□ -1.71
HMGB3-203ENST00000430118 SF3B3Q15393 1217 aaKnown RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms