RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 FSCBQ5H9T9 825 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 DNAJC14Q6Y2X3 702 aaPredicted RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 KLHL23Q8NBE8 558 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 TXNDC5Q8NBS9 432 aaKnown RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 PSD4Q8NDX1 1056 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 HEXDCQ8WVB3 486 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 LPGAT1Q92604 370 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 FERMT1Q9BQL6 677 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 C1orf50Q9BV19 199 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 LRRC40Q9H9A6 602 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 EXD2Q9NVH0 621 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 FZD10Q9ULW2 581 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 EFR3BQ9Y2G0 817 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 CDY2AQ9Y6F7 541 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 CDY1Q9Y6F8 540 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 COMMD10Q9Y6G5 202 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 THSD7AQ9UPZ6 1657 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 H3BMM5 538 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 ZNF195O14628 629 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 B4GAT1O43505 415 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 FKBP6O75344 327 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 TBX18O95935 607 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 CCDC166P0CW27 439 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 EEF1B2P24534 225 aaKnown RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 MATKP42679 507 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 SERPINB8P50452 374 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 CCR3P51677 355 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 SLC7A2P52569 658 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 ARHGAP1Q07960 439 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 DPYSL2Q16555 572 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 VPS26BQ4G0F5 336 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 RARS2Q5T160 578 aaKnown RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 LRRC8BQ6P9F7 803 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 SPPL2CQ8IUH8 684 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 SIX5Q8N196 739 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 ARHGAP18Q8N392 663 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 ANKRD52Q8NB46 1076 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 VPS33AQ96AX1 596 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 IFT43Q96FT9 208 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 NSUN5Q96P11 429 aaKnown RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 MMADHCQ9H3L0 296 aaPredicted RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 PPCSQ9HAB8 311 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 FAM50BQ9Y247 325 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 LY75O60449 1722 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 A8MX80 341 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 GPR39O43194 453 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 BAIAP3O94812 1187 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ICAM3P32942 547 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 PIK3CGP48736 1102 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 C1QTNF8P60827 252 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 TNFAIP2Q03169 654 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 TMEM110Q86TL2 294 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 PSTKQ8IV42 348 aaKnown RBP8.75□□□□□ -1.01
USP40-203ENST00000427112 FAM47BQ8NA70 645 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ZNF419Q96HQ0 510 aaPredicted RBP8.75□□□□□ -1.01
USP40-203ENST00000427112 NT5MQ9NPB1 228 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ZNF180Q9UJW8 692 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 PPME1Q9Y570 386 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ZCWPW2A0A1B0GU75 182 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ARHGEF37A1IGU5 675 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 C7orf72A4D263 438 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 GRID2O43424 1007 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ZBTB11O95625 1053 aaPredicted RBP8.75□□□□□ -1.01
USP40-203ENST00000427112 TFAP2AP05549 437 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ADRA1BP35368 520 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 SEMG2Q02383 582 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 MAP3K10Q02779 954 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 PIGFQ07326 219 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 RPS6KA2Q15349 733 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 FAM83EQ2M2I3 478 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 AAK1Q2M2I8 961 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ANKDD1AQ495B1 522 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 GPR158Q5T848 1215 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 EPGNQ6UW88 154 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 SAPCD2Q86UD0 394 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CLVS1Q8IUQ0 354 aaPredicted RBP8.75□□□□□ -1.01
USP40-203ENST00000427112 MIER2Q8N344 545 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CNTD1Q8N815 330 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.75□□□□□ -1.01
USP40-203ENST00000427112 BLOC1S5Q8TDH9 187 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ACTRT2Q8TDY3 377 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CYP3A43Q9HB55 503 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 RBM22Q9NW64 420 aaKnown RBP eCLIP8.75□□□□□ -1.01
USP40-203ENST00000427112 FAM8A1Q9UBU6 413 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ITGA11Q9UKX5 1188 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 ACOT9Q9Y305 439 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 QSER1Q2KHR3 1735 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 F8W8V4 182 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 HDAC3O15379 428 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 TADA2AO75478 443 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CNMDO75829 334 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 LINC00032P0C843 101 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 SMPD1P17405 629 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CYP2B6P20813 491 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 SLC1A2P43004 574 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 SCNN1GP51170 649 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CLCNKBP51801 687 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 PSME3P61289 254 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 PPP1R2P3Q6NXS1 205 aa8.75□□□□□ -1.01
USP40-203ENST00000427112 CANT1Q8WVQ1 401 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms