RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 TMEM174Q8WUU8 243 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 FBXL8Q96CD0 374 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 LPIN3Q9BQK8 851 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 TRIM15Q9C019 465 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 CDH19Q9H159 772 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 NXF3Q9H4D5 531 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 ENTPD7Q9NQZ7 604 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 MAN1C1Q9NR34 630 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 OLA1Q9NTK5 396 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 MYRFQ9Y2G1 1151 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 SBF1O95248 1867 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 TRPC5OSA6NMA1 111 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 ZNF623O75123 536 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 ALX3O95076 343 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 STAU1O95793 577 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 ITGALP20701 1170 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 SOX11P35716 441 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 EPHB3P54753 998 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 B2MP61769 119 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 C6orf10Q5SRN2 563 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 C10orf62Q5T681 223 aaPredicted RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 NEUROG2Q9H2A3 272 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 GANQ9H2C0 597 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 IL20Q9NYY1 176 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 CDK5RAP2Q96SN8 1893 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 TISP43B9A030 160 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 ADAMTS4O75173 837 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 C4BPAP04003 597 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 ERBB2P04626 1255 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 NDST1P52848 882 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 PRKCQQ04759 706 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 AUHQ13825 339 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 MGAT5BQ3V5L5 792 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 PAN2Q504Q3 1202 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 TRMT10CQ7L0Y3 403 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 FAM71AQ8IYT1 594 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 FEZF2Q8TBJ5 459 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 HSFY1Q96LI6 401 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 HERC2P3Q9BVR0 1158 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 S100A14Q9HCY8 104 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 VPS45Q9NRW7 570 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 CNTN3Q9P232 1028 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 AP4B1Q9Y6B7 739 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 TNFSF9P41273 254 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 ECT2LQ008S8 904 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 RUNX1T1Q06455 604 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 HSPA14Q0VDF9 509 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 MOGQ16653 247 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 GEN1Q17RS7 908 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 C5orf22Q49AR2 442 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 METTL2BQ6P1Q9 378 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 LILRB2Q8N423 598 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 SGF29Q96ES7 293 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 RMND5BQ96G75 393 aaPredicted RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 METTL2AQ96IZ6 378 aaKnown RBP9.93□□□□□ -0.82
USP54-205ENST00000424265 TBATAQ96M53 351 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 PRM3Q9NNZ6 103 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 SPG21Q9NZD8 308 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 NEU2Q9Y3R4 380 aa9.93□□□□□ -0.82
USP54-205ENST00000424265 A8MU76 341 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 PDPK1O15530 556 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 IFNA16P05015 189 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 GSNP06396 782 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 GPD1P21695 349 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 SLC12A2P55011 1212 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 GALNT1Q10472 559 aaPredicted RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 DHX34Q14147 1143 aaKnown RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 FAM171A1Q5VUB5 890 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 SLC39A5Q6ZMH5 540 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ACOT1Q86TX2 421 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 DCP2Q8IU60 420 aaKnown RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 TTC25Q96NG3 672 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 OR2B2Q9GZK3 357 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ADAMTS10Q9H324 1103 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ZNF221Q9UK13 617 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 RAB26Q9ULW5 256 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 RNF225M0QZC1 329 aaPredicted RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 IFNA14P01570 189 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 AKR1D1P51857 326 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 NKX2-5P52952 324 aaPredicted RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 ALKBH2Q6NS38 261 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 GALNT18Q6P9A2 607 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 RCOR2Q8IZ40 523 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 C2orf15Q8WU43 125 aaKnown RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 BCAS3Q9H6U6 928 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 MRPL17Q9NRX2 175 aaKnown RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 FAM49BQ9NUQ9 324 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 MOCS1Q9NZB8 636 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 CENPXA8MT69 81 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 YKT6O15498 198 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 OR7A10O76100 309 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 GRIA2P42262 883 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 POLD2P49005 469 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 KLK7P49862 253 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 MAPK11Q15759 364 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 SFT2D3Q587I9 215 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 NUDT18Q6ZVK8 323 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 ZIC5Q96T25 663 aa9.92□□□□□ -0.82
USP54-205ENST00000424265 SEPT5Q99719 369 aaPredicted RBP9.92□□□□□ -0.82
USP54-205ENST00000424265 FRMD8P1Q9BZ68 369 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms