RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 RAB10P61026 200 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 USP46P62068 366 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 IGBP1P78318 339 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MRPS22P82650 360 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CDKL1Q00532 357 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 POU4F1Q01851 419 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 GRIK2Q13002 908 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PPP2R5DQ14738 602 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 FXNQ16595 210 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LY6KQ17RY6 165 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LRRC36Q1X8D7 754 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZBED5Q49AG3 693 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SYCP2LQ5T4T6 812 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 C9orf57Q5W0N0 161 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 Q6ZNX1 250 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 FKBP9P1Q75LS8 142 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CMC1Q7Z7K0 106 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ACOT1Q86TX2 421 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ERO1BQ86YB8 467 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 KLHL23Q8NBE8 558 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 JDP2Q8WYK2 163 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TFAP2CQ92754 450 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 NMD3Q96D46 503 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TEKT5Q96M29 485 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SPATA33Q96N06 139 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RANBP9Q96S59 729 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC25A23Q9BV35 468 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 DUSP16Q9BY84 665 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 OXCT2Q9BYC2 517 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PLGRKTQ9HBL7 147 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 EML4Q9HC35 981 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PREBQ9HCU5 417 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SPAG4Q9NPE6 437 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 OLAHQ9NV23 265 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 FAIMQ9NVQ4 179 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LMCD1Q9NZU5 365 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZDHHC2Q9UIJ5 367 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TLK1Q9UKI8 766 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF510Q9Y2H8 683 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ACOT9Q9Y305 439 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 AAR2Q9Y312 384 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SNX9Q9Y5X1 595 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 HEATR9A2RTY3 570 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 EEF2KO00418 725 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZSCAN9O15535 394 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PARNO95453 639 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 F9P00740 461 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ATP5F1P24539 256 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CD68P34810 354 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ADRA1BP35368 520 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MLH1P40692 756 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 IREB2P48200 963 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SULT1E1P49888 294 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PSME3P61289 254 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 OSTNP61366 133 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 COG7P83436 770 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MPP1Q00013 466 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PFKPQ01813 784 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TNK2Q07912 1038 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ARHGAP1Q07960 439 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 GRSF1Q12849 480 aaKnown RBP eCLIP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 BNIP2Q12982 314 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PRPSAP1Q14558 356 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TTLL4Q14679 1199 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 RAB41Q5JT25 222 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PCID2Q5JVF3 399 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 LRRC49Q8IUZ0 686 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 SLC22A9Q8IVM8 553 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 C2CD4AQ8NCU7 369 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PAPD5Q8NDF8 572 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 OR52K1Q8NGK4 314 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PPTC7Q8NI37 304 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 GABPB2Q8TAK5 448 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 TBRG4Q969Z0 631 aaKnown RBP eCLIP5.81□□□□□ -1.481e-14■■■■■ 125.5
CCDC88A-203ENST00000412148 L3HYPDHQ96EM0 354 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 KIF12Q96FN5 646 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PRPF18Q99633 342 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 HOPXQ9BPY8 73 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 GPATCH1Q9BRR8 931 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MLPHQ9BV36 600 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 B3GNT5Q9BYG0 378 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 NUF2Q9BZD4 464 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 PRKD2Q9BZL6 878 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ADAMTS10Q9H324 1103 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 MROH8Q9H579 483 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CLK4Q9HAZ1 481 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CCM2LQ9NUG4 571 aaPredicted RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 DNAAF2Q9NVR5 837 aaKnown RBP5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 ZNF358Q9NW07 568 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 CACNA2D2Q9NY47 1150 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 FBXW11Q9UKB1 542 aa5.81□□□□□ -1.48
CCDC88A-203ENST00000412148 A0A087WXM4 84 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 A0A087WZ62 844 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 A0A0G2JLL6 359 aaPredicted RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 C7orf72A4D263 438 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 ASB14A6NK59 587 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 HNRNPRO43390 633 aaKnown RBP5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 DLX3O60479 287 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 MATN4O95460 622 aa5.8□□□□□ -1.48
CCDC88A-203ENST00000412148 CHRNGP07510 517 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms