RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TCRBV9S1A1TA0A576 114 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 CFAP73A6NFT4 308 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 GFRA2O00451 464 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 TYROBPO43914 113 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 MGAT1P26572 445 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PBX2P40425 430 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC10A7Q0GE19 358 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 CCDC15Q0P6D6 951 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 MTM1Q13496 603 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PDK4Q16654 411 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PRSS36Q5K4E3 855 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 SPANXN3Q5MJ09 141 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 STEAP4Q687X5 459 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 GRASPQ7Z6J2 395 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 METTL3Q86U44 580 aaKnown RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 MFN1Q8IWA4 741 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 TTC16Q8NEE8 873 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 IPMKQ8NFU5 416 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 OR52K1Q8NGK4 314 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PTCD2Q8WV60 388 aaKnown RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 WBP2Q969T9 261 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 OTUB2Q96DC9 234 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 OXNAD1Q96HP4 312 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PAFAH2Q99487 392 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 GORASP1Q9BQQ3 440 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 WDR83Q9BRX9 315 aaKnown RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PDFQ9HBH1 243 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 PAPLNO95428 1278 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 INHBAP08476 426 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 HOXD9P28356 352 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 CCR2P41597 374 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 GRIA1P42261 906 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 NRIP1P48552 1158 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 WDR4P57081 412 aaKnown RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC12A1Q13621 1099 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 FRG1Q14331 258 aaKnown RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 STXBP5Q5T5C0 1151 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 UNC5AQ6ZN44 842 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 IGDCC3Q8IVU1 814 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 BBS7Q8IWZ6 715 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 OR7D4Q8NG98 312 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 GDAP1Q8TB36 358 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 C2orf49Q9BVC5 232 aaPredicted RBP18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 CERS4Q9HA82 394 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 KLHL14Q9P2G3 628 aa18.45■□□□□ 0.54
CCDC88C-203ENST00000389856 A0A0D9SEW6 157 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 CXorf51AA0A1B0GTR3 108 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 MOSPD3O75425 235 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 RASSF9O75901 435 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 CA4P22748 312 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 PRKCHP24723 683 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 WEE1P30291 646 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 SGSHP51688 502 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 LAMB3Q13751 1172 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 HHATQ5VTY9 493 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 CXorf57Q6NSI4 855 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 RETSATQ6NUM9 610 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 POTEHQ6S545 545 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 LRRC6Q86X45 466 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 SUGP1Q8IWZ8 645 aaKnown RBP18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 DCAKDQ8WVC6 231 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 TTC17Q96AE7 1141 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF707Q96C28 371 aaPredicted RBP18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 TCEAL4Q96EI5 215 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 PSKH2Q96QS6 385 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 FICDQ9BVA6 458 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 PITPNM3Q9BZ71 974 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 KIAA1522Q9P206 1035 aaPredicted RBP18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF180Q9UJW8 692 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 VPS28Q9UK41 221 aa18.44■□□□□ 0.54
CCDC88C-203ENST00000389856 FAM237BA0A1B0GVD1 139 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 CBX4O00257 560 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 PMPCBO75439 489 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 ZXDBP98169 803 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 ZNF697Q5TEC3 545 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 DCAF4L2Q8NA75 395 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 PPHLN1Q8NEY8 458 aaKnown RBP18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 SPATA22Q8NHS9 363 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC44A1Q8WWI5 657 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 USP13Q92995 863 aaPredicted RBP18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 ACDQ96AP0 544 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 MRPL38Q96DV4 380 aaKnown RBP18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 SYBUQ9NX95 663 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 UBP1Q9NZI7 540 aa18.43■□□□□ 0.54
CCDC88C-203ENST00000389856 USP12O75317 370 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 USP1O94782 785 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 SERPINF2P08697 491 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 ALADP13716 330 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 BMP8BP34820 402 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 CD86P42081 329 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 WNT3AP56704 352 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 INO80DQ53TQ3 878 aaPredicted RBP18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 RALGPS1Q5JS13 557 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 FAM182AQ5T1J6 154 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 ALG1LQ6GMV1 187 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 ADGRD2Q7Z7M1 963 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 SLC26A11Q86WA9 606 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 CTAGE3PQ8IX95 158 aa18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 AGGF1Q8N302 714 aaeCLIP18.42■□□□□ 0.54
CCDC88C-203ENST00000389856 MPP5Q8N3R9 675 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms