RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 KCNK18Q7Z418 384 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 TRPT1Q86TN4 253 aaKnown RBP-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 C11orf74Q86VG3 221 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 YAF2Q8IY57 180 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 FAM185AQ8N0U4 392 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 CD177Q8N6Q3 437 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 Q8N9L7 120 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 C17orf47Q8NEP4 570 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 MRGPRDQ8TDS7 321 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 NUS1Q96E22 293 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 ST6GAL2Q96JF0 529 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 C3orf30Q96M34 536 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 DMRTA2Q96SC8 542 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 VRK1Q99986 396 aaPredicted RBP-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 LRRC1Q9BTT6 524 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 MXD3Q9BW11 206 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 RNF26Q9BY78 433 aaPredicted RBP-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 ST6GALNAC1Q9NSC7 600 aaPredicted RBP-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 PLCXD1Q9NUJ7 323 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 KLK12Q9UKR0 248 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 SNX9Q9Y5X1 595 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 BPTFQ12830 3046 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 PCNX1Q96RV3 2341 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 APCP25054 2843 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 BIRC6Q9NR09 4857 aa-0.53□□□□□ -2.49
RNU6-540P-201ENST00000384622 NT5C1B-RDH14C9J2C7 533 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 SGTAO43765 313 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 CCNT2O60583 730 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GAGE7O76087 117 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 LCKP06239 509 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GAGE12FP0CL80 117 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GAGE12GP0CL81 117 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GAGE12IP0CL82 117 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 SPRR2DP22532 72 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 NDUFS1P28331 727 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 FMO4P31512 558 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 UQCRC1P31930 480 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 HNF4AP41235 474 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 SLC5A3P53794 718 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 SNX16P57768 344 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 PPARDQ03181 441 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF155Q12901 538 aaPredicted RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GAGE1Q13065 139 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GAGE4Q13068 117 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 CTTNQ14247 550 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 KRT33BQ14525 404 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 CCDC157Q569K6 752 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZNF326Q5BKZ1 582 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 TOR2AQ5JU69 321 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 C10orf76Q5T2E6 689 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 Q6P435 159 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 CCBE1Q6UXH8 406 aaPredicted RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 KCTD8Q6ZWB6 473 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 GRINAQ7Z429 371 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 ZC3H3Q8IXZ2 948 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 LRRC57Q8N9N7 239 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 SUMF1Q8NBK3 374 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 BPIFB1Q8TDL5 484 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 TGFBRAP1Q8WUH2 860 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 TANKQ92844 425 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 BADQ92934 168 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 RBMXL1Q96E39 390 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 PRR11Q96HE9 360 aaPredicted RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 TMEM19Q96HH6 336 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 UPF2Q9HAU5 1272 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 TOPORSQ9NS56 1045 aaPredicted RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 ABHD10Q9NUJ1 306 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 AFF4Q9UHB7 1163 aaKnown RBP-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 CCDC168Q8NDH2 2452 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 COL6A6A6NMZ7 2263 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 MYO7AQ13402 2215 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 LAMA5O15230 3695 aa-0.54□□□□□ -2.5
RNU6-540P-201ENST00000384622 KDM2BQ8NHM5 1336 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 A0A087WUV0 522 aaPredicted RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 CCDC163A0A0D9SF12 145 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 KDM4EB2RXH2 506 aaPredicted RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 DUS4LO95620 317 aaKnown RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 ASNSP08243 561 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 FOLR2P14207 255 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 UGT1A4P22310 534 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 YY1P25490 414 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 DUSP1P28562 367 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 RPL3P39023 403 aaKnown RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 AARSP49588 968 aaKnown RBP eCLIP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 CDH12P55289 794 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 SNRPD1P62314 119 aaKnown RBP-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 SNAPC2Q13487 334 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 DNASE1L3Q13609 305 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 GALNT3Q14435 633 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 KRT31Q15323 416 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 CLUL1Q15846 466 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 FFAR4Q5NUL3 377 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 DCAF10Q5QP82 559 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 BAIAP2L2Q6UXY1 529 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 KRTAP19-3Q7Z4W3 81 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 CEACAM19Q7Z692 300 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 P3H2Q8IVL5 708 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 SCML4Q8N228 414 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 SMC1BQ8NDV3 1235 aa-0.55□□□□□ -2.5
RNU6-540P-201ENST00000384622 CEP76Q8TAP6 659 aa-0.55□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms