RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ZDHHC2Q9UIJ5 367 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 PRG3Q9Y2Y8 225 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 THSD7BQ9C0I4 1608 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 VWA8A3KMH1 1905 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CCL22O00626 93 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 GRID2O43424 1007 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CA12O43570 354 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 HSPA4LO95757 839 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CKBP12277 381 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 ARSAP15289 507 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 GRIA4P48058 902 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 FCGRTP55899 365 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 ACTR3P61158 418 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 COG7P83436 770 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 SLC34A1Q06495 639 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 RBM20Q5T481 1227 aaKnown RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 LINC00523Q86TU6 105 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 MYLK4Q86YV6 388 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 EGFL6Q8IUX8 553 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 ATAD1Q8NBU5 361 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 HMCESQ96FZ2 354 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 STN1Q9H668 368 aaKnown RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 RGS18Q9NS28 235 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 STX18Q9P2W9 335 aaKnown RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 FGF10O15520 208 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 DLX3O60479 287 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 OAZ2O95190 189 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 SLC10A7Q0GE19 358 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 ARL13AQ5H913 290 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 MS4A13Q5J8X5 152 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 THEMIS2Q5TEJ8 643 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CNSTQ6PJW8 725 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 NET1Q7Z628 596 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 CIR1Q86X95 450 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 STYXQ8WUJ0 223 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 SCG3Q8WXD2 468 aaKnown RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 IGSF8Q969P0 613 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 UROC1Q96N76 676 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 PRDM5Q9NQX1 630 aaPredicted RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 IPO11Q9UI26 975 aaKnown RBP13.55□□□□□ -0.24
CCDC3-202ENST00000378839 PPM1HQ9ULR3 514 aa13.55□□□□□ -0.24
CCDC3-202ENST00000378839 PDE5AO76074 875 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 VNN2O95498 520 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 LMNAP02545 664 aaKnown RBP13.54□□□□□ -0.24
CCDC3-202ENST00000378839 ITGAXP20702 1163 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 GLDCP23378 1020 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 TAS2R39P59534 338 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 MAPRE1Q15691 268 aaKnown RBP13.54□□□□□ -0.24
CCDC3-202ENST00000378839 TBCCQ15814 346 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 EML3Q32P44 896 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 RSPO2Q6UXX9 243 aaPredicted RBP13.54□□□□□ -0.24
CCDC3-202ENST00000378839 LRRC74BQ6ZQY2 392 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 PGBD5Q8N414 524 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 CATSPERBQ9H7T0 1116 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 TBC1D13Q9NVG8 400 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 SORCS3Q9UPU3 1222 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 SCML2Q9UQR0 700 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 TMEM233B4DJY2 109 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 MATN2O00339 956 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 ATP5BP06576 529 aaKnown RBP13.54□□□□□ -0.24
CCDC3-202ENST00000378839 ATP6V1C1P21283 382 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 GATMP50440 423 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 NAGLUP54802 743 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 WNT3AP56704 352 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 INHBEP58166 350 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 MXRA7P84157 204 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 PSMD5Q16401 504 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 PPM1LQ5SGD2 360 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 DNAJC9Q8WXX5 260 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 FAM136AQ96C01 138 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 NDNQ99608 321 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 OLFM1Q99784 485 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 TNFRSF12AQ9NP84 129 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 PLXNA3P51805 1871 aa13.54□□□□□ -0.24
CCDC3-202ENST00000378839 FAM95CA0A1B0GW59 222 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 NEMP2A6NFY4 417 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 EPHA3P29320 983 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 OR1G1P47890 313 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 TM4SF4P48230 202 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 LRRC8EQ6NSJ5 796 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 RPS27LQ71UM5 84 aaKnown RBP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 C2CD4AQ8NCU7 369 aaPredicted RBP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 UCMAQ8WVF2 138 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 DRC3Q9H069 523 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 ATP13A1Q9HD20 1204 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 XPR1Q9UBH6 696 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF212Q9UDV6 495 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 SLC27A5Q9Y2P5 690 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 TMEM114B3SHH9 223 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 NEMP1O14524 444 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 NVLO15381 856 aaKnown RBP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF189O75820 626 aaPredicted RBP13.53□□□□□ -0.24
CCDC3-202ENST00000378839 ANXA9O76027 345 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 KLHL2O95198 593 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 KCNA5P22460 613 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 DSC2Q02487 901 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 TMEM198Q66K66 360 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF470Q6ECI4 717 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 PGM2L1Q6PCE3 622 aa13.53□□□□□ -0.24
CCDC3-202ENST00000378839 LDB1Q86U70 411 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms