RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 CLNKQ7Z7G1 428 aa13.34□□□□□ -0.27
NPHP4-203ENST00000378169 FAM228AQ86W67 206 aa13.34□□□□□ -0.27
NPHP4-203ENST00000378169 RAB42Q8N4Z0 105 aa13.34□□□□□ -0.27
NPHP4-203ENST00000378169 PIWIL1Q96J94 861 aaKnown RBP13.34□□□□□ -0.27
NPHP4-203ENST00000378169 AGO3Q9H9G7 860 aaKnown RBP13.34□□□□□ -0.27
NPHP4-203ENST00000378169 SLC17A6Q9P2U8 582 aa13.34□□□□□ -0.27
NPHP4-203ENST00000378169 STYXL1Q9Y6J8 313 aa13.34□□□□□ -0.27
NPHP4-203ENST00000378169 MYH14Q7Z406 1995 aaKnown RBP13.33□□□□□ -0.27
NPHP4-203ENST00000378169 SAC3D1A6NKF1 404 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 C5orf58C9J3I9 102 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 KRT36O76013 467 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 F7P08709 466 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-203ENST00000378169 ME2P23368 584 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 PGS1Q32NB8 556 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 RHBDF2Q6PJF5 856 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 CLEC20AQ6ZU45 233 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 HFE2Q6ZVN8 426 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 GPSM1Q86YR5 675 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 UNC5BQ8IZJ1 945 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 ACBD6Q9BR61 282 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 HIPK3Q9H422 1215 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 OSGEPL1Q9H4B0 414 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 NDUFAF1Q9Y375 327 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 LTBP3Q9NS15 1303 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 C5orf60A6NFR6 353 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 L1CAMP32004 1257 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 GABRB2P47870 512 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 LRRC74BQ6ZQY2 392 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 FAM126BQ8IXS8 530 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 SPPL2BQ8TCT7 592 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 RHOJQ9H4E5 214 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 PIGVQ9NUD9 493 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 ARL8BQ9NVJ2 186 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 TMEM161AQ9NX61 479 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 STRCP1A6NGW2 1772 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 GNG14A0A1W2PPG7 69 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 IGSF6O95976 241 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 ALBP02768 609 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 WDR4P57081 412 aaKnown RBP13.33□□□□□ -0.28
NPHP4-203ENST00000378169 PABPC1LQ4VXU2 614 aaKnown RBP13.33□□□□□ -0.28
NPHP4-203ENST00000378169 OTUD3Q5T2D3 398 aaPredicted RBP13.33□□□□□ -0.28
NPHP4-203ENST00000378169 JADE3Q92613 823 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 SERAC1Q96JX3 654 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 XYLT2Q9H1B5 865 aa13.33□□□□□ -0.28
NPHP4-203ENST00000378169 C9IYK1 514 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PSMD12O00232 456 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 TBX18O95935 607 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 GJA9P57773 515 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 CHRNB3Q05901 458 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 DLG2Q15700 870 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 FBXO48Q5FWF7 155 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 TTC33Q6PID6 262 aaPredicted RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 VSTM1Q6UX27 236 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 TMEM110Q86TL2 294 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 STAG3L4Q8TBR4 150 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 OTULINQ96BN8 352 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 MED8Q96G25 268 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PRPF18Q99633 342 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 VWA7Q9Y334 891 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 RAD54BQ9Y620 910 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 CRYBG1Q9Y4K1 1723 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PKD1L3Q7Z443 1732 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 A8MUI8 341 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 E9PAM4 449 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 RAD51BO15315 384 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 CPSF4O95639 269 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 AP2A1O95782 977 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 STAU1O95793 577 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 AMHP03971 560 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 CYP3A5P20815 502 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 FOXN2P32314 431 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 DSC2Q02487 901 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 VWA5B1Q5TIE3 1220 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 ESRP1Q6NXG1 681 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PIWIL4Q7Z3Z4 852 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 MILR1Q7Z6M3 343 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 SYTL1Q8IYJ3 562 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 NIPA2Q8N8Q9 360 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 ZNF555Q8NEP9 628 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 THAP11Q96EK4 314 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 ZMAT2Q96NC0 199 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 SLC4A5Q9BY07 1137 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 ZDHHC6Q9H6R6 413 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 MAGEA13PA6NCF6 341 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 MLNP12872 115 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PTPN3P26045 913 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 CLCN5P51795 746 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PRKAA2P54646 552 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 MPP1Q00013 466 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 CYP51A1Q16850 503 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 TBCELQ5QJ74 424 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PPM1LQ5SGD2 360 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 VARS2Q5ST30 1063 aaKnown RBP13.32□□□□□ -0.28
NPHP4-203ENST00000378169 ANKS1BQ7Z6G8 1248 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 ZNF398Q8TD17 642 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PIK3R5Q8WYR1 880 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 BTN2A3PQ96KV6 586 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 PHACTR1Q9C0D0 580 aa13.32□□□□□ -0.28
NPHP4-203ENST00000378169 KLHL4Q9C0H6 718 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms