RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 GDF3Q9NR23 364 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 ANAPC7Q9UJX3 599 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 CABIN1Q9Y6J0 2220 aa17.1■□□□□ 0.33
HMGN4-201ENST00000377575 SPAARA0A1B0GVQ0 90 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 A0A1W2PQU0 124 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 A0A1W2PR77 199 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 ARHGAP42A6NI28 874 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 PRAMEF26H0Y7S4 382 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 KRIT1O00522 736 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 YKT6O15498 198 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 PCDH8O95206 1070 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 POP4O95707 220 aaKnown RBP17.09■□□□□ 0.33
HMGN4-201ENST00000377575 WNT1P04628 370 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 CYP1A2P05177 515 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 RHOAP61586 193 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 OVGP1Q12889 678 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 FOXC1Q12948 553 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 STAT4Q14765 748 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 ZNF805Q5CZA5 627 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 KCNT1Q5JUK3 1230 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 CCDC122Q5T0U0 273 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 KIAA1161Q6NSJ0 714 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 PARS2Q7L3T8 475 aaKnown RBP17.09■□□□□ 0.33
HMGN4-201ENST00000377575 IQCHQ86VS3 1027 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 ZSCAN30Q86W11 494 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 OXR1Q8N573 874 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 NIPA2Q8N8Q9 360 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 MFSD2AQ8NA29 543 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 RNF214Q8ND24 703 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 OR6K2Q8NGY2 324 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 RAB7BQ96AH8 199 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 CAMK1GQ96NX5 476 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 ZNHIT6Q9NWK9 470 aaKnown RBP17.09■□□□□ 0.33
HMGN4-201ENST00000377575 UBA2Q9UBT2 640 aaPredicted RBP17.09■□□□□ 0.33
HMGN4-201ENST00000377575 IP6K2Q9UHH9 426 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 PCOLCE2Q9UKZ9 415 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 ANKRD36A6QL64 1941 aa17.09■□□□□ 0.33
HMGN4-201ENST00000377575 H0Y8X5 98 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 H3BRJ5 948 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 TLR4O00206 839 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 RNF103O00237 685 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 AP1G1O43747 822 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 PCDHGA12O60330 932 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 ARL4AP40617 200 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 HCAR3P49019 387 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 TRIP6Q15654 476 aaKnown RBP17.08■□□□□ 0.32
HMGN4-201ENST00000377575 DPYSL2Q16555 572 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 TSR1Q2NL82 804 aaKnown RBP17.08■□□□□ 0.32
HMGN4-201ENST00000377575 MYLK3Q32MK0 819 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 BOLA3Q53S33 107 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 ATXN7L2Q5T6C5 722 aaPredicted RBP17.08■□□□□ 0.32
HMGN4-201ENST00000377575 VSTM4Q8IW00 320 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 OR8K1Q8NGG5 319 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 ARHGEF26Q96DR7 871 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 CELF6Q96J87 481 aaKnown RBP17.08■□□□□ 0.32
HMGN4-201ENST00000377575 ELF4Q99607 663 aaPredicted RBP17.08■□□□□ 0.32
HMGN4-201ENST00000377575 DNAJC7Q99615 494 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 KLC2Q9H0B6 622 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 DEF6Q9H4E7 631 aa17.08■□□□□ 0.32
HMGN4-201ENST00000377575 A0A1B0GTQ1 180 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 MYO1FO00160 1098 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 WNT9AO14904 365 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 PRAMEF11O60813 436 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 TRIM16O95361 564 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 UGT2B4P06133 528 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 ERCC2P18074 760 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 HNRNPA2B1P22626 353 aaKnown RBP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 AKT2P31751 481 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 GKP32189 559 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 EIF4A3P38919 411 aaKnown RBP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 GRK6P43250 576 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 ARRB1P49407 418 aaPredicted RBP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 NXPH1P58417 271 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 RPS21P63220 83 aaKnown RBP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 DPYSQ14117 519 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 SLC18A3Q16572 532 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 SMTNL2Q2TAL5 461 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 ZNF284Q2VY69 593 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 DBX2Q6ZNG2 339 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 LZTR1Q8N653 840 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 ZNF564Q8TBZ8 553 aaPredicted RBP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 TEKT4Q8WW24 435 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 HSPH1Q92598 858 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 CDC6Q99741 560 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 PDFQ9HBH1 243 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 FADS3Q9Y5Q0 445 aa17.07■□□□□ 0.32
HMGN4-201ENST00000377575 COL5A1P20908 1838 aaPredicted RBP17.07■□□□□ 0.32
HMGN4-201ENST00000377575 SSU72P8A0A1W2PR75 194 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 C16orf96A6NNT2 1141 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 NEMP1O14524 444 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 KCNK3O14649 394 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 SLC31A1O15431 190 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 CBFA2T3O75081 653 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 PRLRP16471 622 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 IL1R2P27930 398 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 PAPOLAP51003 745 aaKnown RBP17.06■□□□□ 0.32
HMGN4-201ENST00000377575 FAM193AP78312 1265 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 IL9RQ01113 521 aa17.06■□□□□ 0.32
HMGN4-201ENST00000377575 GRM3Q14832 879 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms