RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RANBP9Q96S59 729 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 LRRC4Q9HBW1 653 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 CACNA2D2Q9NY47 1150 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 RRN3Q9NYV6 651 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 SLC8A2Q9UPR5 921 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 RALGAPA2Q2PPJ7 1873 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 TSPAN1O60635 241 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 CD68P34810 354 aaPredicted RBP21.4■■□□□ 1.02
UPF3A-202ENST00000375299 GRM5P41594 1212 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 RIN3Q8TB24 985 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 HMGCLL1Q8TB92 370 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 CIB1Q99828 191 aa21.4■■□□□ 1.02
UPF3A-202ENST00000375299 CLK4Q9HAZ1 481 aaKnown RBP21.4■■□□□ 1.02
UPF3A-202ENST00000375299 CNOT6Q9ULM6 557 aaKnown RBP21.4■■□□□ 1.02
UPF3A-202ENST00000375299 PLOD2O00469 737 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 VTNP04004 478 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 PDGFRBP09619 1106 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 TPH1P17752 444 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 NUP107P57740 925 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 RALGDSQ12967 914 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 PDZD4Q76G19 769 aaPredicted RBP21.39■■□□□ 1.02
UPF3A-202ENST00000375299 SNRNP27Q8WVK2 155 aaKnown RBP21.39■■□□□ 1.02
UPF3A-202ENST00000375299 PLGRKTQ9HBL7 147 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 TBCCD1Q9NVR7 557 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 GPRC5DQ9NZD1 345 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 TUBGCP4Q9UGJ1 667 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 ZNHIT2Q9UHR6 403 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 ACOT9Q9Y305 439 aa21.39■■□□□ 1.02
UPF3A-202ENST00000375299 CHSY3Q70JA7 882 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 BNIPLQ7Z465 357 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 PBXIP1Q96AQ6 731 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 EFHD1Q9BUP0 239 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 OSBPL6Q9BZF3 934 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 TRPC7Q9HCX4 862 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 GTSE1Q9NYZ3 720 aa21.39■■□□□ 1.01
UPF3A-202ENST00000375299 PRORSD1PA6NEY8 169 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 FBP2O00757 339 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 PGK2P07205 417 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 INSRRP14616 1297 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 ERCC2P18074 760 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 NFKB1P19838 968 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 STT3AP46977 705 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 SQLEQ14534 574 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 ZNF484Q5JVG2 852 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 LRRC52Q8N7C0 313 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 LINC01465Q8N7H1 131 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 ZMAT2Q96NC0 199 aaKnown RBP21.38■■□□□ 1.01
UPF3A-202ENST00000375299 GPR78Q96P69 363 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 NPY6RQ99463 290 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 NOL11Q9H8H0 719 aaKnown RBP21.38■■□□□ 1.01
UPF3A-202ENST00000375299 SPAG4Q9NPE6 437 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 MRGBPQ9NV56 204 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 FAIMQ9NVQ4 179 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 DUS2Q9NX74 493 aaKnown RBP21.38■■□□□ 1.01
UPF3A-202ENST00000375299 NCKIPSDQ9NZQ3 722 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 RGS17Q9UGC6 210 aaPredicted RBP21.38■■□□□ 1.01
UPF3A-202ENST00000375299 RAD54BQ9Y620 910 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 M0QYT0 321 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 GABRB3P28472 473 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 NOS2P35228 1153 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 CDH15P55291 814 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 ZNF460Q14592 562 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 ITPRIPL1Q6GPH6 555 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 DLK2Q6UY11 383 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 CYP2R1Q6VVX0 501 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 CRYBG2Q8N1P7 616 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 SLC2A14Q8TDB8 520 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 NXNL1Q96CM4 212 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 MPHOSPH6Q99547 160 aaKnown RBP21.38■■□□□ 1.01
UPF3A-202ENST00000375299 OMDQ99983 421 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 VPS45Q9NRW7 570 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 ERAP1Q9NZ08 941 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 CD300AQ9UGN4 299 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 DERAQ9Y315 318 aa21.38■■□□□ 1.01
UPF3A-202ENST00000375299 CCDC78A2IDD5 438 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 PGK1P00558 417 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 AHSGP02765 367 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 ADIGQ0VDE8 80 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 ZBTB17Q13105 803 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 NME3Q13232 169 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 FASTKQ14296 549 aaKnown RBP21.37■■□□□ 1.01
UPF3A-202ENST00000375299 NHSL2Q5HYW2 709 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 C6orf10Q5SRN2 563 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 GADL1Q6ZQY3 521 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 ZBTB49Q6ZSB9 765 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 PIWIL4Q7Z3Z4 852 aaKnown RBP21.37■■□□□ 1.01
UPF3A-202ENST00000375299 GPR141Q7Z602 305 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 ANKFN1Q8N957 763 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 SPPL2BQ8TCT7 592 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 NT5C3BQ969T7 300 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 FTHL17Q9BXU8 183 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 TUBA8Q9NY65 449 aaPredicted RBP21.37■■□□□ 1.01
UPF3A-202ENST00000375299 SHROOM3Q8TF72 1996 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 SH3PXD2BA1X283 911 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 TPP2P29144 1249 aaPredicted RBP21.37■■□□□ 1.01
UPF3A-202ENST00000375299 MAGEA8P43361 318 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 RAB10P61026 200 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 IRAK1BP1Q5VVH5 260 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 PPP4R4Q6NUP7 873 aa21.37■■□□□ 1.01
UPF3A-202ENST00000375299 CNSTQ6PJW8 725 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms