RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 EXD3Q8N9H8 876 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 SMARCE1Q969G3 411 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 SGF29Q96ES7 293 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 PPP1R13BQ96KQ4 1090 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 KLF6Q99612 283 aaPredicted RBP14.11□□□□□ -0.15
VPS29-201ENST00000360579 CCDC3Q9BQI4 270 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 HEPHQ9BQS7 1158 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 C1QTNF2Q9BXJ5 285 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 SLC13A1Q9BZW2 595 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 STRADBQ9C0K7 418 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 TNKS2Q9H2K2 1166 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 WDCPQ9H6R7 721 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 WDR70Q9NW82 654 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 ACSL6Q9UKU0 697 aa14.11□□□□□ -0.15
VPS29-201ENST00000360579 TDRD6O60522 2096 aaKnown RBP14.11□□□□□ -0.15
VPS29-201ENST00000360579 PMS2P1A4D2B8 440 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 M0QYT0 321 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 RNF103O00237 685 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 NEMP1O14524 444 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 TERTO14746 1132 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 DAB1O75553 588 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 GRAP2O75791 330 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 ADCY5O95622 1261 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 OR1E1P30953 314 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 SERPINH1P50454 418 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 PDX1P52945 283 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 ADKP55263 362 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 EIF2B5Q13144 721 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 ALFQ53S48 1182 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 PRRT3Q5FWE3 981 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 SLC35F3Q8IY50 421 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 FBXO39Q8N4B4 442 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 SPATA20Q8TB22 786 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 SCG3Q8WXD2 468 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 ARHGEF26Q96DR7 871 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 CPXM1Q96SM3 734 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 INTS2Q9H0H0 1204 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 TKTL2Q9H0I9 626 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 SYNDIG1Q9H7V2 258 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 UBE2TQ9NPD8 197 aaPredicted RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 STARD5Q9NSY2 213 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 ARHGEF38Q9NXL2 777 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 HOOK1Q9UJC3 728 aaKnown RBP14.1□□□□□ -0.15
VPS29-201ENST00000360579 PADI4Q9UM07 663 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 COL12A1Q99715 3063 aa14.1□□□□□ -0.15
VPS29-201ENST00000360579 A0A0D9SEW6 157 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 ILVBLA1L0T0 632 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 IGLON5A6NGN9 336 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 DRGXA6NNA5 263 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 NTN3O00634 580 aaPredicted RBP14.09□□□□□ -0.15
VPS29-201ENST00000360579 TOR1BO14657 336 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 SPINT1O43278 529 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 ZNF821O75541 412 aaPredicted RBP14.09□□□□□ -0.15
VPS29-201ENST00000360579 GCATO75600 419 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 ENDOD1O94919 500 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 GNA14O95837 355 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 AFPP02771 609 aaKnown RBP14.09□□□□□ -0.15
VPS29-201ENST00000360579 KRT10P13645 584 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 SLC5A2P31639 672 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 CXCR3P49682 368 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 DNA2P51530 1060 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 YPEL5P62699 121 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 DRAP1Q14919 205 aaPredicted RBP14.09□□□□□ -0.15
VPS29-201ENST00000360579 LINC00303Q3SY05 128 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 CARD16Q5EG05 197 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 FOXR2Q6PJQ5 311 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 OLFML1Q6UWY5 402 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 PARS2Q7L3T8 475 aaKnown RBP14.09□□□□□ -0.15
VPS29-201ENST00000360579 RAB11FIP2Q7L804 512 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 SLC26A9Q7LBE3 791 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 ZDHHC17Q8IUH5 632 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 PHACTR4Q8IZ21 702 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 RBFAQ8N0V3 343 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 FSTL5Q8N475 847 aaPredicted RBP14.09□□□□□ -0.15
VPS29-201ENST00000360579 C1orf74Q96LT6 269 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 SEMA3CQ99985 751 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 C1QTNF7Q9BXJ2 289 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 TRIM4Q9C037 500 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 EPB41L5Q9HCM4 733 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 SEPT10Q9P0V9 454 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 STAP1Q9ULZ2 295 aa14.09□□□□□ -0.15
VPS29-201ENST00000360579 COL27A1Q8IZC6 1860 aaPredicted RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 CXorf51AA0A1B0GTR3 108 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 BICDL2A1A5D9 508 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 YY2O15391 372 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 EFSO43281 561 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 F9P00740 461 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 LIPCP11150 499 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 UGT1A5P35504 534 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 BLKP51451 505 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 CCNHP51946 323 aaPredicted RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 SLC6A3Q01959 620 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 SRSF1Q07955 248 aaKnown RBP eCLIP14.08□□□□□ -0.16
VPS29-201ENST00000360579 TPRG1LQ5T0D9 272 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 SMYD5Q6GMV2 418 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 LVRNQ6Q4G3 990 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 ZNF574Q6ZN55 896 aaPredicted RBP14.08□□□□□ -0.16
VPS29-201ENST00000360579 FAM183BPQ6ZVS7 135 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 TFAP2DQ7Z6R9 452 aa14.08□□□□□ -0.16
VPS29-201ENST00000360579 JAMLQ86YT9 394 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms