RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 RCOR3Q9P2K3 495 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 KLHL33A6NCF5 533 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SLC4A1P02730 911 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SMIM10L2AP0DMW4 78 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SMIM10L2BP0DMW5 78 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 DARSP14868 501 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 EPHX2P34913 555 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CXCR3P49682 368 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 PPIDQ08752 370 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF789Q5FWF6 425 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 RBM20Q5T481 1227 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 NAPEPLDQ6IQ20 393 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 LSMEM2Q8N112 164 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 MYO1HQ8N1T3 1032 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 HEXDCQ8WVB3 486 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 LRTOMTQ8WZ04 291 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SENP8Q96LD8 212 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 SMOQ99835 787 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 LIN28AQ9H9Z2 209 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 WDR6Q9NNW5 1121 aaKnown RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 C6orf203Q9P0P8 240 aaPredicted RBP12.29□□□□□ -0.44
CLIP3-201ENST00000360535 IPPQ9Y573 584 aa12.29□□□□□ -0.44
CLIP3-201ENST00000360535 CXCL11O14625 94 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 HNRNPRO43390 633 aaKnown RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 GPR32O75388 356 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 PABPC4LP0CB38 370 aaKnown RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 COG7P83436 770 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 FBXO48Q5FWF7 155 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 PIGGQ5H8A4 983 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 METTL21CQ5VZV1 264 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 CLEC6AQ6EIG7 209 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 CNSTQ6PJW8 725 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 TRIM67Q6ZTA4 783 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 CLEC14AQ86T13 490 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 MFSD6LQ8IWD5 586 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 METTL25Q8N6Q8 603 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 TXNDC5Q8NBS9 432 aaKnown RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 GRIN3AQ8TCU5 1115 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 RHOJQ9H4E5 214 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 MTF2Q9Y483 593 aaPredicted RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 E7ENX8 843 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 MSI1O43347 362 aaKnown RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 XPOTO43592 962 aaKnown RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 CABYRO75952 493 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 TFAP2AP05549 437 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 BDNFP23560 247 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 NPY2RP49146 381 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 DAOAP59103 153 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 MAXP61244 160 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 MYBPC1Q00872 1141 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 BEX3Q00994 111 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 EZH1Q92800 747 aaPredicted RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 TEKT5Q96M29 485 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 CIB1Q99828 191 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 DNAI2Q9GZS0 605 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 FBXW11Q9UKB1 542 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 HEMK1Q9Y5R4 338 aaPredicted RBP12.28□□□□□ -0.44
CLIP3-201ENST00000360535 COMMD3-BMI1R4GMX3 469 aa12.28□□□□□ -0.44
CLIP3-201ENST00000360535 SEC24DO94855 1032 aaPredicted RBP12.27□□□□□ -0.44
CLIP3-201ENST00000360535 CTSHP09668 335 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 SMIM18P0DKX4 95 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 KCNA5P22460 613 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 SLC1A2P43004 574 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 RAB10P61026 200 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 PSME3P61289 254 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 SNX17Q15036 470 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 KLHDC10Q6PID8 442 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 ATPAF2Q8N5M1 289 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 TRIML2Q8N7C3 387 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 OR6P1Q8NGX9 317 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 SLC45A3Q96JT2 553 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 GAD1Q99259 594 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 GPR22Q99680 433 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 PAAF1Q9BRP4 392 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 TRIM8Q9BZR9 551 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 SPON1Q9HCB6 807 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 TNFRSF12AQ9NP84 129 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 MPP6Q9NZW5 540 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 GIMAP2Q9UG22 337 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 SFMBT1Q9UHJ3 866 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 MID2Q9UJV3 735 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 NRCAMQ92823 1304 aa12.27□□□□□ -0.44
CLIP3-201ENST00000360535 H3BSA7 217 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 ETFBP38117 255 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 RPL5P46777 297 aaKnown RBP12.27□□□□□ -0.45
CLIP3-201ENST00000360535 CSE1LP55060 971 aaKnown RBP12.27□□□□□ -0.45
CLIP3-201ENST00000360535 CDH13P55290 713 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 LSAMPQ13449 338 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 MYLK3Q32MK0 819 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 MTX3Q5HYI7 312 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 PGAM4Q8N0Y7 254 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 TBL1YQ9BQ87 522 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 C1QTNF1Q9BXJ1 281 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 COQ10BQ9H8M1 238 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 ZBTB26Q9HCK0 441 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 FBRSL1Q9HCM7 1045 aaKnown RBP12.27□□□□□ -0.45
CLIP3-201ENST00000360535 NDFIP2Q9NV92 336 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 EPS15L1Q9UBC2 864 aa12.27□□□□□ -0.45
CLIP3-201ENST00000360535 PRPF19Q9UMS4 504 aaKnown RBP12.27□□□□□ -0.45
CLIP3-201ENST00000360535 AURKCQ9UQB9 309 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms