RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 KRIT1O00522 736 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 SLC31A1O15431 190 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 PRPSAP2O60256 369 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 PCDH8O95206 1070 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 GSRP00390 522 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 ADRB3P13945 408 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 TCF4P15884 667 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 PRLRP16471 622 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 IL1R2P27930 398 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 SNRPD1P62314 119 aaKnown RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 SHBQ15464 509 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 NFKBIBQ15653 356 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 SETMARQ53H47 684 aaPredicted RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 PARS2Q7L3T8 475 aaKnown RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 VPS36Q86VN1 386 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 HORMAD1Q86X24 394 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 SPATS2Q86XZ4 545 aaKnown RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 MFSD2AQ8NA29 543 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 BAHD1Q8TBE0 780 aaPredicted RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 RHBDD1Q8TEB9 315 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 SKA1Q96BD8 255 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 CELF6Q96J87 481 aaKnown RBP18.68■□□□□ 0.58
CLN3-202ENST00000355477 BTBD6Q96KE9 485 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 DMTF1Q9Y222 760 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 SHROOM3Q8TF72 1996 aa18.68■□□□□ 0.58
CLN3-202ENST00000355477 A0A1B0GTQ1 180 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 C16orf96A6NNT2 1141 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 EIF3CLB5ME19 914 aaKnown RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 PRAMEF26H0Y7S4 382 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 J3KR12 359 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 PCDHGA12O60330 932 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 POP4O95707 220 aaKnown RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 NUDT1P36639 197 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 CCT8P50990 548 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 NEK3P51956 506 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 NXPH1P58417 271 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 SUZ12Q15022 739 aaKnown RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 CYTH1Q15438 398 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 INO80DQ53TQ3 878 aaPredicted RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 PPP6R3Q5H9R7 873 aaPredicted RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 SEL1L3Q68CR1 1132 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 ALKBH5Q6P6C2 394 aaKnown RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 FBXL19Q6PCT2 694 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 RFX8Q6ZV50 586 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 ARHGEF26Q96DR7 871 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 ELF4Q99607 663 aaPredicted RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 EIF3CQ99613 913 aaKnown RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 MYOCQ99972 504 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 SLC39A8Q9C0K1 460 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 TSPY26PQ9H489 355 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 CWC15Q9P013 229 aaKnown RBP18.67■□□□□ 0.58
CLN3-202ENST00000355477 NENFQ9UMX5 172 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.67■□□□□ 0.58
CLN3-202ENST00000355477 FADS3Q9Y5Q0 445 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 CACNA1BQ00975 2339 aa18.67■□□□□ 0.58
CLN3-202ENST00000355477 WDFY3Q8IZQ1 3526 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 FLRT2O43155 660 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 HYAL3O43820 417 aaPredicted RBP18.66■□□□□ 0.58
CLN3-202ENST00000355477 DFNA5O60443 496 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 CYP1A2P05177 515 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 UGT2B4P06133 528 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 ERCC2P18074 760 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 HNRNPH3P31942 346 aaKnown RBP18.66■□□□□ 0.58
CLN3-202ENST00000355477 PCK1P35558 622 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 NDST2P52849 883 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 STAT4Q14765 748 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 TMEM259Q4ZIN3 620 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 SLC45A4Q5BKX6 768 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 ZNF805Q5CZA5 627 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 GLRX5Q86SX6 157 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 SLCO6A1Q86UG4 719 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 IQCHQ86VS3 1027 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 PSTKQ8IV42 348 aaKnown RBP18.66■□□□□ 0.58
CLN3-202ENST00000355477 PNPLA1Q8N8W4 532 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 TMEM145Q8NBT3 493 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 CASKIN2Q8WXE0 1202 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 LRIG1Q96JA1 1093 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 SCNM1Q9BWG6 230 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 PDFQ9HBH1 243 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 FZD3Q9NPG1 666 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 GDF3Q9NR23 364 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 LHX3Q9UBR4 397 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 PLXNB3Q9ULL4 1909 aa18.66■□□□□ 0.58
CLN3-202ENST00000355477 INSIG1O15503 277 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 DAPK3O43293 454 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 PRAMEF11O60813 436 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 TPM3P06753 285 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 FTH1P19P0C7X4 201 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 EIF4A3P38919 411 aaKnown RBP18.65■□□□□ 0.58
CLN3-202ENST00000355477 ABL2P42684 1182 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 HCAR3P49019 387 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 PAPOLAP51003 745 aaKnown RBP18.65■□□□□ 0.58
CLN3-202ENST00000355477 RHOAP61586 193 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 FGL2Q14314 439 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 ACAP1Q15027 740 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 SMTNL2Q2TAL5 461 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 CCDC122Q5T0U0 273 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 AFMIDQ63HM1 303 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 TXNRD3NBQ6F5E7 133 aa18.65■□□□□ 0.58
CLN3-202ENST00000355477 GATAD2AQ86YP4 633 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms