RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 IL12RB2Q99665 862 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 HEPHQ9BQS7 1158 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 ZDHHC6Q9H6R6 413 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 FBRSQ9HAH7 460 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 IL36AQ9UHA7 158 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 DNPEPQ9ULA0 475 aa22.48■■□□□ 1.19
SHMT1-203ENST00000354098 ZBTB24O43167 697 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-203ENST00000354098 HLA-DQB2P05538 268 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 HOXA6P31267 233 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 PSMD8P48556 350 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 SCNN1BP51168 640 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 NRLP54845 237 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 NSUN2Q08J23 767 aaKnown RBP eCLIP22.47■■□□□ 1.19
SHMT1-203ENST00000354098 POM121L1PQ3SYA9 428 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 ZNF776Q68DI1 518 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-203ENST00000354098 DARS2Q6PI48 645 aaKnown RBP22.47■■□□□ 1.19
SHMT1-203ENST00000354098 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.47■■□□□ 1.19
SHMT1-203ENST00000354098 SLC35B2Q8TB61 432 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 PRCCQ92733 491 aaPredicted RBP22.47■■□□□ 1.19
SHMT1-203ENST00000354098 MGME1Q9BQP7 344 aa22.47■■□□□ 1.19
SHMT1-203ENST00000354098 ALOX15BO15296 676 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 RNASEH1O60930 286 aaKnown RBP22.46■■□□□ 1.19
SHMT1-203ENST00000354098 LEFTY1O75610 366 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 POP4O95707 220 aaKnown RBP22.46■■□□□ 1.19
SHMT1-203ENST00000354098 SP9P0CG40 484 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 PRLRP16471 622 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 TCP1P17987 556 aaKnown RBP22.46■■□□□ 1.19
SHMT1-203ENST00000354098 PTPN3P26045 913 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 CASQ1P31415 396 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 WASHC5Q12768 1159 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 CST6Q15828 149 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 BBS5Q8N3I7 341 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 PIP4K2CQ8TBX8 421 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 HTR3CQ8WXA8 447 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 TTC7AQ9ULT0 858 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-203ENST00000354098 TTLL3Q9Y4R7 772 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 SAR1BQ9Y6B6 198 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 CES2O00748 559 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 AXIN1O15169 862 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 MID1O15344 667 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 C7P10643 843 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 CR2P20023 1033 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 SLC8A1P32418 973 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 ITKQ08881 620 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 SRLQ86TD4 932 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 CDKL3Q8IVW4 592 aaPredicted RBP22.46■■□□□ 1.19
SHMT1-203ENST00000354098 AGAP3Q96P47 875 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 ATP8A1Q9Y2Q0 1164 aa22.46■■□□□ 1.19
SHMT1-203ENST00000354098 BCLAF3A2AJT9 711 aaKnown RBP22.45■■□□□ 1.18
SHMT1-203ENST00000354098 LIASO43766 372 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 NEBLO76041 1014 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 CSNK1DP48730 415 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 SNX1Q13596 522 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 TEX44Q53QW1 395 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 DSG4Q86SJ6 1040 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 FRMD1Q8N878 549 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 TMIEQ8NEW7 156 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 ACTRT1Q8TDG2 376 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 RLN3Q8WXF3 142 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 USP29Q9HBJ7 922 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 INVSQ9Y283 1065 aa22.45■■□□□ 1.18
SHMT1-203ENST00000354098 PLK4O00444 970 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 KCNN4O15554 427 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 PIGNO95427 931 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 DNTTP04053 509 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 PRNPP04156 253 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 HSPA9P38646 679 aaKnown RBP22.44■■□□□ 1.18
SHMT1-203ENST00000354098 IHHQ14623 411 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 AADATQ8N5Z0 425 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 MAIP1Q8WWC4 291 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 NELL1Q92832 810 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 CAPZA3Q96KX2 299 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 NUDCD1Q96RS6 583 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 TMEM121Q9BTD3 319 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 AP1M1Q9BXS5 423 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 NOD2Q9HC29 1040 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 SERGEFQ9UGK8 458 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 AMACRQ9UHK6 382 aa22.44■■□□□ 1.18
SHMT1-203ENST00000354098 H0Y858 1186 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 PGRMC1O00264 195 aaKnown RBP22.43■■□□□ 1.18
SHMT1-203ENST00000354098 KPNA3O00505 521 aaPredicted RBP22.43■■□□□ 1.18
SHMT1-203ENST00000354098 UGT2B4P06133 528 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 ACADMP11310 421 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 DSC2Q02487 901 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 ZNF528Q3MIS6 628 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 NCEH1Q6PIU2 408 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 ZSCAN30Q86W11 494 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 CREG2Q8IUH2 290 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 PRELID2Q8N945 189 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 PRSS33Q8NF86 280 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 ARRDC2Q8TBH0 407 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 SEMA3CQ99985 751 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 CPEB1Q9BZB8 566 aaKnown RBP22.43■■□□□ 1.18
SHMT1-203ENST00000354098 POLR1EQ9GZS1 481 aaKnown RBP22.43■■□□□ 1.18
SHMT1-203ENST00000354098 PABPC3Q9H361 631 aaKnown RBP22.43■■□□□ 1.18
SHMT1-203ENST00000354098 SCUBE2Q9NQ36 999 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 ITM2CQ9NQX7 267 aa22.43■■□□□ 1.18
SHMT1-203ENST00000354098 C1QTNF3-AMACRE9PGA6 284 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 MTSS1O43312 755 aa22.42■■□□□ 1.18
SHMT1-203ENST00000354098 ADH1BP00325 375 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms