RNA–Protein interactions for RNA: ENST00000342785.8

VCAN-202, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 7,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-202ENST00000342785 SPASTQ9UBP0 616 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 PNMA8BQ9ULN7 279 aaPredicted RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 COL1A2P08123 1366 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 TRIM38O00635 465 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 CCNT2O60583 730 aaKnown RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 CD52P31358 61 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 RPL5P46777 297 aaKnown RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 NDUFV1P49821 464 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 RHBDF2Q6PJF5 856 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 TAS1R3Q7RTX0 852 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 GLT6D1Q7Z4J2 308 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 TTC30AQ86WT1 665 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 PQLC1Q8N2U9 271 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 EXOSC4Q9NPD3 245 aaKnown RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 VPS45Q9NRW7 570 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 RHBDL2Q9NX52 303 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ZNF229Q9UJW7 825 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 PRPF19Q9UMS4 504 aaKnown RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 C15orf38-AP3S2A0A0A6YYH1 394 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ZNF839A8K0R7 811 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 C5orf58C9J3I9 102 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 TREHO43280 583 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ONECUT3O60422 494 aaPredicted RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 PAGE1O75459 146 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 HGFP14210 728 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 GSTT1P30711 240 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 IL2P60568 153 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 KLF1Q13351 362 aaPredicted RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 ACSBG2Q5FVE4 666 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 FSTL4Q6MZW2 842 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ELMSAN1Q6PJG2 1045 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ARPINQ7Z6K5 226 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 AMIGO2Q86SJ2 522 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 CLEC4CQ8WTT0 213 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ZFRQ96KR1 1074 aaKnown RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 LPIN3Q9BQK8 851 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 ZYG11BQ9C0D3 744 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 UXTQ9UBK9 157 aaPredicted RBP7.27□□□□□ -1.25
VCAN-202ENST00000342785 WASF2Q9Y6W5 498 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 CNTNAP1P78357 1384 aa7.27□□□□□ -1.25
VCAN-202ENST00000342785 RGS20O76081 388 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 ATP6V1E1P36543 226 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 PPP3CCP48454 512 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 TRAF2Q12933 501 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 DPYSL2Q16555 572 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 BRMS1LQ5PSV4 323 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 LPCAT4Q643R3 524 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 TMEM110Q86TL2 294 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 HORMAD1Q86X24 394 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 CAMK1DQ8IU85 385 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 CLVS1Q8IUQ0 354 aaPredicted RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 PLD3Q8IV08 490 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 FAM9CQ8IZT9 166 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 DCAKDQ8WVC6 231 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 HGH1Q9BTY7 390 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 EME2A4GXA9 379 aaPredicted RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 CAPN8A6NHC0 703 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 MANSC4A6NHS7 340 aaPredicted RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 MSI1O43347 362 aaKnown RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 MMP3P08254 477 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 VAC14Q08AM6 782 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 FSTL1Q12841 308 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 SEMA5AQ13591 1074 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 SOWAHAQ2M3V2 549 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 LRRC8DQ7L1W4 858 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 MILR1Q7Z6M3 343 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 SPATA22Q8NHS9 363 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 EBF4Q9BQW3 602 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 SIX4Q9UIU6 781 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 PSMD13Q9UNM6 376 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 MYBPHLA2RUH7 354 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 YJEFN3A6XGL0 299 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 HNRNPRO43390 633 aaKnown RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 RTN3O95197 1032 aaPredicted RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 ZNF682O95780 498 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 FGFR1P11362 822 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 FGFR3P22607 806 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 L1CAMP32004 1257 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 SLC7A2P52569 658 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 TUSC3Q13454 348 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 DCLRE1AQ6PJP8 1040 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 ADCK2Q7Z695 626 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 DDX53Q86TM3 631 aaKnown RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 SOCS4Q8WXH5 440 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 FIG4Q92562 907 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 VPS33AQ96AX1 596 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 SLC9A7Q96T83 725 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 HERPUD2Q9BSE4 406 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 STRA6Q9BX79 667 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 ZNF358Q9NW07 568 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 PARP4Q9UKK3 1724 aaKnown RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 TTLL13PA6NNM8 815 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 CXorf49A8MYA2 514 aaPredicted RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 APOA1P02647 267 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 CCNG1P51959 295 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 DDR2Q16832 855 aa7.26□□□□□ -1.25
VCAN-202ENST00000342785 FAM98BQ52LJ0 330 aaKnown RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 INTS6LQ5JSJ4 861 aaKnown RBP7.26□□□□□ -1.25
VCAN-202ENST00000342785 RFWD3Q6PCD5 774 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms