RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 CR2P20023 1033 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 COILP38432 576 aaPredicted RBP22.48■■□□□ 1.19
SDC3-202ENST00000339394 WHAMMP3Q1A5X7 153 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 MYLK3Q32MK0 819 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 CCDC137Q6PK04 289 aaKnown RBP22.48■■□□□ 1.19
SDC3-202ENST00000339394 MAMSTRQ6ZN01 415 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 PID1Q7Z2X4 250 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.48■■□□□ 1.19
SDC3-202ENST00000339394 SPATA4Q8NEY3 305 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 ATL2Q8NHH9 583 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 HAUS2Q9NVX0 235 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 TRHDEQ9UKU6 1024 aa22.48■■□□□ 1.19
SDC3-202ENST00000339394 FARP1Q9Y4F1 1045 aaPredicted RBP22.48■■□□□ 1.19
SDC3-202ENST00000339394 FAM86C2PA6NEL3 165 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 C5orf60A6NFR6 353 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 STK10O94804 968 aaKnown RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 IFNB1P01574 187 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 GKP32189 559 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 CD68P34810 354 aaPredicted RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 CSNK1DP48730 415 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 DGKEP52429 567 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 DNTTIP2Q5QJE6 756 aaKnown RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 ANKRD20A2Q5SQ80 823 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 ANKRD20A1Q5TYW2 823 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 ANKRD20A3Q5VUR7 823 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 ALG1LQ6GMV1 187 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 OR2T3Q8NH03 318 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 CCDC110Q8TBZ0 833 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 OR8D1Q8WZ84 308 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 VOPP1Q96AW1 172 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 RTP4Q96DX8 246 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 MKRN2Q9H000 416 aaKnown RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 DDX47Q9H0S4 455 aaKnown RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 EVLQ9UI08 416 aaPredicted RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 MYO18AQ92614 2054 aaKnown RBP22.47■■□□□ 1.19
SDC3-202ENST00000339394 ATG2BQ96BY7 2078 aa22.47■■□□□ 1.19
SDC3-202ENST00000339394 CCDC188H7C350 402 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 INSIG1O15503 277 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 POP4O95707 220 aaKnown RBP22.46■■□□□ 1.19
SDC3-202ENST00000339394 CHRNA3P32297 505 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 FNTAP49354 379 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 COPAP53621 1224 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 GSTA5Q7RTV2 222 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 SRLQ86TD4 932 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 SPATA13Q96N96 652 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 NUDCD1Q96RS6 583 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 SEMA3CQ99985 751 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 HEPHQ9BQS7 1158 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 NOD2Q9HC29 1040 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 POLMQ9NP87 494 aaPredicted RBP22.46■■□□□ 1.19
SDC3-202ENST00000339394 TCRBV21S2A2A0A5A6 115 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 GCATO75600 419 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 CTSLP07711 333 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 CXCL12P48061 93 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 SATB1Q01826 763 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 CKAP4Q07065 602 aaKnown RBP22.46■■□□□ 1.19
SDC3-202ENST00000339394 ZNF572Q7Z3I7 529 aaPredicted RBP22.46■■□□□ 1.19
SDC3-202ENST00000339394 GLIS1Q8NBF1 620 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 ARRDC2Q8TBH0 407 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 NSMCE3Q96MG7 304 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 RSPH9Q9H1X1 276 aaPredicted RBP22.46■■□□□ 1.19
SDC3-202ENST00000339394 ZDHHC6Q9H6R6 413 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 GLOD4Q9HC38 313 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 SCUBE2Q9NQ36 999 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 SPATA6Q9NWH7 488 aaPredicted RBP22.46■■□□□ 1.19
SDC3-202ENST00000339394 IL36AQ9UHA7 158 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 PPM1HQ9ULR3 514 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 WASF2Q9Y6W5 498 aa22.46■■□□□ 1.19
SDC3-202ENST00000339394 ALOX15BO15296 676 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 OPHN1O60890 802 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 LEFTY1O75610 366 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 ETS1P14921 441 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 CCR3P51677 355 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 DSC2Q02487 901 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 LMNB2Q03252 620 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 RAD51Q06609 339 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 NIPAL4Q0D2K0 466 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 KCTD19Q17RG1 926 aaPredicted RBP22.45■■□□□ 1.18
SDC3-202ENST00000339394 P3H1Q32P28 736 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 ARSIQ5FYB1 569 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 PRUNE1Q86TP1 453 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 TMPRSS6Q8IU80 811 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 MMAAQ8IVH4 418 aaKnown RBP22.45■■□□□ 1.18
SDC3-202ENST00000339394 KLHL7Q8IXQ5 586 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 CCDC89Q8N998 374 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 GRIN3AQ8TCU5 1115 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 SLC25A51Q9H1U9 297 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 FBRSQ9HAH7 460 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 FEZ2Q9UHY8 353 aaPredicted RBP22.45■■□□□ 1.18
SDC3-202ENST00000339394 SARDHQ9UL12 918 aa22.45■■□□□ 1.18
SDC3-202ENST00000339394 IL1BP01584 269 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 NFKB1P19838 968 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 CES1P23141 567 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 MAPK8P45983 427 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 AP1S1P61966 158 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 RALGPS1Q5JS13 557 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 NCEH1Q6PIU2 408 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 TSTD1Q8NFU3 115 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 MRGPRX1Q96LB2 322 aa22.44■■□□□ 1.18
SDC3-202ENST00000339394 HHIPQ96QV1 700 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms