RNA–Protein interactions for RNA: ENST00000314289.12

RNF4-201, Transcript of ring finger protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF4, Length 3,088 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-201ENST00000314289 ZNF683Q8IZ20 524 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 UCMAQ8WVF2 138 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 INPP5DQ92835 1189 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 FCRL5Q96RD9 977 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 VN1R3Q9BXE9 311 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 NMUR2Q9GZQ4 415 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 DOCK4Q8N1I0 1966 aa12.59□□□□□ -0.39
RNF4-201ENST00000314289 PEX11BO96011 259 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 AHSGP02765 367 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 C2P06681 752 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 PAX3P23760 479 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 SPRP35270 261 aaPredicted RBP12.58□□□□□ -0.39
RNF4-201ENST00000314289 LIMK2P53671 638 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 OCRLQ01968 901 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 KLC1Q07866 573 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 PTPRCAPQ14761 206 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 GRTP1Q5TC63 336 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 BHMTQ93088 406 aa12.58□□□□□ -0.39
RNF4-201ENST00000314289 SLC38A8A6NNN8 435 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 GLRA3O75311 464 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 ANXA9O76027 345 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 FGF3P11487 239 aaPredicted RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 CNTFP26441 200 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 ARNTP27540 789 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 RASSF2P50749 326 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 MRPS35P82673 323 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 TLE2Q04725 743 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 TRIM60Q495X7 471 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 KHDC1Q4VXA5 237 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 MARC1Q5VT66 337 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 ATG16L1Q676U5 607 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 MBLAC2Q68D91 279 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SLC41A1Q8IVJ1 513 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 LGI2Q8N0V4 545 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 LZTR1Q8N653 840 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 OR52K2Q8NGK3 314 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 DIS3LQ8TF46 1054 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 EXOC2Q96KP1 924 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 BTN2A3PQ96KV6 586 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 RILPQ96NA2 401 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SHCBP1LQ9BZQ2 653 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 PRDM5Q9NQX1 630 aaPredicted RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 SEC24AO95486 1093 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SPATA31D3P0C874 917 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SLC6A4P31645 630 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 MAGEA11P43364 429 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 CCR10P46092 362 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 ERFP50548 548 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 RPS24P62847 133 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 POLD3Q15054 466 aaPredicted RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 RBBP5Q15291 538 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 VWA5B1Q5TIE3 1220 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 MSANTD2Q6P1R3 559 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 PKN3Q6P5Z2 889 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SPATA31D4Q6ZUB0 917 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.58□□□□□ -0.43e-6■■■■■ 69.6
RNF4-201ENST00000314289 PGBD5Q8N414 524 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 ATP6V0D2Q8N8Y2 350 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 DTX3LQ8TDB6 740 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 PPP1R36Q96LQ0 422 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 ELAC1Q9H777 363 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 PAPOLBQ9NRJ5 636 aaKnown RBP12.58□□□□□ -0.4
RNF4-201ENST00000314289 PNPOQ9NVS9 261 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 NMRK1Q9NWW6 199 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 SMPD4Q9NXE4 827 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 DNAJC16Q9Y2G8 782 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 KCTD3Q9Y597 815 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 GREB1Q4ZG55 1949 aa12.58□□□□□ -0.4
RNF4-201ENST00000314289 TK2O00142 265 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 NVLO15381 856 aaKnown RBP12.57□□□□□ -0.4
RNF4-201ENST00000314289 PROCP04070 461 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 GLDCP23378 1020 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 ALDH18A1P54886 795 aaKnown RBP12.57□□□□□ -0.4
RNF4-201ENST00000314289 USP10Q14694 798 aaKnown RBP12.57□□□□□ -0.4
RNF4-201ENST00000314289 RCN1Q15293 331 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 TRIP4Q15650 581 aaPredicted RBP12.57□□□□□ -0.4
RNF4-201ENST00000314289 CTC1Q2NKJ3 1217 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 EML3Q32P44 896 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 ZNF789Q5FWF6 425 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 PCID2Q5JVF3 399 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 RNF220Q5VTB9 566 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 AFMIDQ63HM1 303 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 ZNF470Q6ECI4 717 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 LINC00523Q86TU6 105 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 CRLF3Q8IUI8 442 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 DENND1CQ8IV53 801 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 CRIPAKQ8N1N5 446 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 SPPL2BQ8TCT7 592 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 C1orf74Q96LT6 269 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 ANKRD27Q96NW4 1050 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 NDNQ99608 321 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 MIPEPQ99797 713 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 KIFC1Q9BW19 673 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 PPARGC1AQ9UBK2 798 aaKnown RBP12.57□□□□□ -0.4
RNF4-201ENST00000314289 COL4A4P53420 1690 aaPredicted RBP12.57□□□□□ -0.4
RNF4-201ENST00000314289 MUSKO15146 869 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 TSPAN3O60637 253 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 RAMP2O60895 175 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 HAUS5O94927 633 aa12.57□□□□□ -0.4
RNF4-201ENST00000314289 SNUPNO95149 360 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms