RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MAP2K7O14733 419 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 CRY1Q16526 586 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 IQCF2Q8IXL9 164 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SKA1Q96BD8 255 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 PARK7Q99497 189 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 POP1Q99575 1024 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 SEMA4BQ9NPR2 832 aaPredicted RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 ZMYM2Q9UBW7 1377 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 A0A087WZ62 844 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 ABHD2P08910 425 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 IDO1P14902 403 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 RGS1Q08116 209 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 DPYSL3Q14195 570 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 CREG2Q8IUH2 290 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 MBOAT7Q96N66 472 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 PHF12Q96QT6 1004 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 CKLFQ9UBR5 152 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SYNPO2Q9UMS6 1093 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 A0A1W2PQ72 361 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 CHST10O43529 356 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 ACSL4O60488 711 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 FMO4P31512 558 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 MYBPC1Q00872 1141 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 PARP6Q2NL67 630 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 IRAK1BP1Q5VVH5 260 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 PAGE2Q7Z2X7 111 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 CLHC1Q8NHS4 586 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 RDH11Q8TC12 318 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 HDAC7Q8WUI4 952 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 PTCD2Q8WV60 388 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 MARK4Q96L34 752 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 TEFMQ96QE5 360 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 TLR10Q9BXR5 811 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 BHLHE41Q9C0J9 482 aaPredicted RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 CYP2A6P11509 494 aaPredicted RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 UBAP2LQ14157 1087 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 OR8H1Q8NGG4 311 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 TMEM169Q96HH4 297 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 GMCL1Q96IK5 515 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 SLC4A5Q9BY07 1137 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 RAB26Q9ULW5 256 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 DAGLAQ9Y4D2 1042 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 ANKDD1BA6NHY2 528 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 AKAP3O75969 853 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 MAPTP10636 758 aaKnown RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 GRIA4P48058 902 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 C18orf25Q96B23 403 aaPredicted RBP14□□□□□ -0.17
CSPG4-201ENST00000308508 EFR3BQ9Y2G0 817 aa14□□□□□ -0.17
CSPG4-201ENST00000308508 MATN2O00339 956 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 ENTPD3O75355 529 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF432O94892 652 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 MRPL57Q9BQC6 102 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TTYH1Q9H313 450 aaPredicted RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 PCDHGA10Q9Y5H3 936 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 RPLP2P05387 115 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 EPORP19235 508 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 POLR2LP62875 67 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TAS1R2Q8TE23 839 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 KLQ9UEF7 1012 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 CARD8Q9Y2G2 431 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 IFNA6P05013 189 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 THP07101 528 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 ACADMP11310 421 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TSHRP16473 764 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TLX1P31314 330 aaPredicted RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 PTPN5P54829 565 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 SUZ12Q15022 739 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 PACS1Q6VY07 963 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TBC1D21Q8IYX1 336 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 PCDHGC5Q9Y5F6 944 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TNS3Q68CZ2 1445 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 OR10H3O60404 316 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 RPL4P36578 427 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 MYBPC3Q14896 1274 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 FAM171BQ6P995 826 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 OAFQ86UD1 273 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF607Q96SK3 696 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 SAE1Q9UBE0 346 aaPredicted RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 MFHAS1Q9Y4C4 1052 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TRIM3O75382 744 aaPredicted RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 LDOC1O95751 146 aaPredicted RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 GALK1P51570 392 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 ZNF772Q68DY9 489 aaPredicted RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 NKAPQ8N5F7 415 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TSEN2Q8NCE0 465 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 PCDH12Q9NPG4 1184 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 RBM7Q9Y580 266 aaKnown RBP13.99□□□□□ -0.17
CSPG4-201ENST00000308508 MAGEB3O15480 346 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 C9P02748 559 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 LTKP29376 864 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 MNDAP41218 407 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 GALNT3Q14435 633 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 PIK3R6Q5UE93 754 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 ALG9Q9H6U8 611 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 TMEM165Q9HC07 324 aa13.99□□□□□ -0.17
CSPG4-201ENST00000308508 SLC28A1O00337 649 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 CXCR2P25025 360 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 SCN1BQ07699 218 aa13.98□□□□□ -0.17
CSPG4-201ENST00000308508 ADIGQ0VDE8 80 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms