RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 B3GNT5Q9BYG0 378 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 FBRSL1Q9HCM7 1045 aaKnown RBP13.64□□□□□ -0.23
SKA3-201ENST00000298260 GTSE1Q9NYZ3 720 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TCAF1Q9Y4C2 921 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TCRBV3S1A0A5B6 114 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 C2CD4BA6NLJ0 364 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 JRKO75564 520 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 ESRRBO95718 433 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 CHRM3P20309 590 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 MYF6P23409 242 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 SELENBP1Q13228 472 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 AQP6Q13520 282 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 EMC2Q15006 297 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 OXA1LQ15070 435 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 HEATR6Q6AI08 1181 aaKnown RBP13.64□□□□□ -0.23
SKA3-201ENST00000298260 NEPROQ6NW34 567 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 IFNEQ86WN2 208 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 DHFR2Q86XF0 187 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 CMTR2Q8IYT2 770 aaKnown RBP13.64□□□□□ -0.23
SKA3-201ENST00000298260 C12orf29Q8N999 325 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 ABHD11Q8NFV4 315 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 CHURC1Q8WUH1 139 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 CAPSLQ8WWF8 208 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 FEM1CQ96JP0 617 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TMX2Q9Y320 296 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TRAF6Q9Y4K3 522 aa13.64□□□□□ -0.23
SKA3-201ENST00000298260 TRIM64CA6NLI5 447 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 TRIM24O15164 1050 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 TADA2AO75478 443 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CLPXO76031 633 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MTHFD1P11586 935 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 TPH1P17752 444 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MAGEA6P43360 314 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 LSM3P62310 102 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 ZNF280DQ6N043 979 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SCUBE3Q8IX30 993 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 TMEM192Q8IY95 271 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CPSF7Q8N684 471 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 PSD4Q8NDX1 1056 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ZC3H15Q8WU90 426 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 PRMT6Q96LA8 375 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 DGCR6LQ9BY27 220 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ELOVL4Q9GZR5 314 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 LHPPQ9H008 270 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MARCH7Q9H992 704 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CYP4F12Q9HCS2 524 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 PDLIM7Q9NR12 457 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 IFT80Q9P2H3 777 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 GIMAP2Q9UG22 337 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ARID2Q68CP9 1835 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ADGRA2Q96PE1 1338 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 KPNA7A9QM74 516 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SYNCRIPO60506 623 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 SNAP91O60641 907 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 DGAT1O75907 488 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MAGP20916 626 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MZF1P28698 734 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 GNL1P36915 607 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 LRP8Q14114 963 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CAPRIN1Q14444 709 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 STEAP4Q687X5 459 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 USP33Q8TEY7 942 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CNPY3Q9BT09 278 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 XYLT2Q9H1B5 865 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SUCOQ9UBS9 1254 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 WARS2Q9UGM6 360 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 SCN9AQ15858 1988 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 YDJCA8MPS7 323 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SDHDO14521 159 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 PFDN6O15212 129 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 NOL3O60936 208 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 S100BP04271 92 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 YWHAQP27348 245 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 JAK3P52333 1124 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 PLK1P53350 603 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 INSCQ1MX18 579 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SLC36A3Q495N2 470 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 OTUD3Q5T2D3 398 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 STYK1Q6J9G0 422 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ERMP1Q7Z2K6 904 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 TMEM151AQ8N4L1 468 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ZFP90Q8TF47 636 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 ITPKCQ96DU7 683 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MCRS1Q96EZ8 462 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 HEXIM2Q96MH2 286 aaKnown RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 RBBP8Q99708 897 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CEP44Q9C0F1 390 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 UNC93B1Q9H1C4 597 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 PIF1Q9H611 641 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SPON1Q9HCB6 807 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 CHRAC1Q9NRG0 131 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.63□□□□□ -0.23
SKA3-201ENST00000298260 PCDHGA3Q9Y5H0 932 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 SPO11Q9Y5K1 396 aa13.63□□□□□ -0.23
SKA3-201ENST00000298260 MAGED1Q9Y5V3 778 aaPredicted RBP13.63□□□□□ -0.23
SKA3-201ENST00000298260 CENPFP49454 3210 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 ZNF701M0R085 212 aaPredicted RBP13.62□□□□□ -0.23
SKA3-201ENST00000298260 KCNK1O00180 336 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 GMNNO75496 209 aa13.62□□□□□ -0.23
SKA3-201ENST00000298260 EEF1DP29692 281 aaKnown RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms