RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 ZNF416Q9BWM5 594 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SP110Q9HB58 689 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ERVK-11Q9UQG0 969 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LRRC42Q9Y546 428 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MRPS14O60783 128 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 VPS26AO75436 327 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ANXA5P08758 320 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 WEE2P0C1S8 567 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ETV5P41161 510 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 DRAP1Q14919 205 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 WDR45BQ5MNZ6 344 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZCCHC9Q8N567 271 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC35G2Q8TBE7 412 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 XAGE3Q8WTP9 111 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 VAT1Q99536 393 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 KIAA1683Q9H0B3 1180 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLCO1B3Q9NPD5 702 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 IL1RAPQ9NPH3 570 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NECTIN3Q9NQS3 549 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FARSBQ9NSD9 589 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MORF4L1Q9UBU8 362 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 AGAP1Q9UPQ3 857 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 B3GNT3Q9Y2A9 372 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC9A8Q9Y2E8 581 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 DOCK2Q92608 1830 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LRRC7Q96NW7 1537 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SMIM22K7EJ46 135 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TO15178 435 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 VAMP7P51809 220 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 DYNLT1P63172 113 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 COL28A1Q2UY09 1125 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 STYK1Q6J9G0 422 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FAM122CQ6P4D5 195 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF549Q6P9A3 640 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 C4orf50Q6ZRC1 276 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 HYLS1Q96M11 299 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TBCBQ99426 244 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF717Q9BY31 904 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 MLXIPQ9HAP2 919 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 GNEQ9Y223 722 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PPRC1Q5VV67 1664 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 H3BUI4 141 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FADS2O95864 444 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 HLA-DRAP01903 254 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 IFNA6P05013 189 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PTPN1P18031 435 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC1A6P48664 564 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FAM126BQ8IXS8 530 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 IFNL3Q8IZI9 196 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TFB1MQ8WVM0 346 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FKBP10Q96AY3 582 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SMAD5Q99717 465 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 KBTBD4Q9NVX7 518 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 NYAP2Q9P242 653 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FBXO40Q9UH90 709 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ACOT9Q9Y305 439 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SORL1Q92673 2214 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TTC34A8MYJ7 566 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SGTAO43765 313 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TAF5LO75529 589 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 KCNH1O95259 989 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LCN1P31025 176 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 AFF1P51825 1210 aaKnown RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PRMT2P55345 433 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 SLC3A1Q07837 685 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 CHMP1BQ7LBR1 199 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 FBXO11Q86XK2 927 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM192Q8IY95 271 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ASB12Q8WXK4 309 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 ZNF560Q96MR9 790 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 AGPAT1Q99943 283 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 LATS2Q9NRM7 1088 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 TMEM184CQ9NVA4 438 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 VANGL2Q9ULK5 521 aa4.89□□□□□ -1.63
CSMD3-201ENST00000297405 PCYT1BQ9Y5K3 369 aaPredicted RBP4.89□□□□□ -1.63
CSMD3-201ENST00000297405 WDR62O43379 1518 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MGAT4DA6NG13 374 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SULT1C2O00338 296 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SNAP29O95721 258 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ANXA3P12429 323 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MAGEA12P43365 314 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 FASTKQ14296 549 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 CDKL4Q5MAI5 379 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 AADACL4Q5VUY2 407 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PAOXQ6QHF9 649 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SLC13A5Q86YT5 568 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 ZDHHC17Q8IUH5 632 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 SVBPQ8N300 66 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 RYBPQ8N488 228 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 XAGE2Q96GT9 111 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PPP1R10Q96QC0 940 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 MGME1Q9BQP7 344 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 IL22Q9GZX6 179 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 GDAP2Q9NXN4 497 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 LEF1Q9UJU2 399 aaPredicted RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 TRHDEQ9UKU6 1024 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 PTGES3LE9PB15 166 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 EEF2KO00418 725 aaKnown RBP4.88□□□□□ -1.63
CSMD3-201ENST00000297405 F9P00740 461 aa4.88□□□□□ -1.63
CSMD3-201ENST00000297405 IFNGP01579 166 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms