RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PARK7Q99497 189 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 PORCNQ9H237 461 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 NT5MQ9NPB1 228 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 SIPA1L3O60292 1781 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MGRN1O60291 552 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TCEA3O75764 348 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ERCC2P18074 760 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ARF4P18085 180 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 BTN3A2P78410 334 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MFSD14CQ5VZR4 134 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ADGRF2Q8IZF7 708 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 CAMKK1Q8N5S9 505 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 GIPC3Q8TF64 312 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 UNKQ9C0B0 810 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 PCDH12Q9NPG4 1184 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TRPM3Q9HCF6 1732 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 MAP3K6O95382 1288 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 F9P00740 461 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 RPL5P46777 297 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 LSM3P62310 102 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 GRTP1Q5TC63 336 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 TIGD7Q6NT04 549 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 NEK5Q6P3R8 708 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 RNF44Q7L0R7 432 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 GPRC5AQ8NFJ5 357 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ACTRT2Q8TDY3 377 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 REPS1Q96D71 796 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 A1CFQ9NQ94 594 aaKnown RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 ABI2Q9NYB9 513 aaPredicted RBP9.97□□□□□ -0.81
COL6A3-201ENST00000295550 OTOFQ9HC10 1997 aa9.97□□□□□ -0.81
COL6A3-201ENST00000295550 DENND5AQ6IQ26 1287 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 AADACL2Q6P093 401 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 ACOT1Q86TX2 421 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 C12orf56Q8IXR9 622 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 EMC1Q8N766 993 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 RXFP2Q8WXD0 754 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 ZNF221Q9UK13 617 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 TISP43B9A030 160 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 HALP42357 657 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 PRKAA2P54646 552 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 BORCS5Q969J3 196 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 CCDC115Q96NT0 180 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 PTPRHQ9HD43 1115 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 ERGIC3Q9Y282 383 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 ITGB4P16144 1822 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 SCGNO76038 276 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 SPANXN3Q5MJ09 141 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 TMEM161BQ8NDZ6 487 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 TRPV1Q8NER1 839 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 SUN5Q8TC36 379 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 AHSPQ9NZD4 102 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 CXCL8P10145 99 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 GLRA2P23416 452 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 POU5F1Q01860 360 aaKnown RBP9.96□□□□□ -0.81
COL6A3-201ENST00000295550 ACSS3Q9H6R3 686 aa9.96□□□□□ -0.81
COL6A3-201ENST00000295550 FARP2O94887 1054 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 KCNH1O95259 989 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 PRG2P13727 222 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 YY1P25490 414 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CLK2P49760 499 aaKnown RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CDK7P50613 346 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CCR4P51679 360 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 RAB25P57735 213 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 FAR1Q8WVX9 515 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 MFSD14AQ96MC6 490 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 WDCPQ9H6R7 721 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CICQ96RK0 1608 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CBFBQ13951 182 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 DPYSL3Q14195 570 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 DACT2Q5SW24 774 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 C2orf69Q8N8R5 385 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CCDC167Q9P0B6 97 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 MRPS7Q9Y2R9 242 aaKnown RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 AK5Q9Y6K8 562 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 SIGLEC16A6NMB1 481 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 HMGCRP04035 888 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 ETS2P15036 469 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CRABP2P29373 138 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 KPNA1P52294 538 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 ARHGDIBP52566 201 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 KCNJ2P63252 427 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 AGAP11Q8TF27 550 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 HTRA1Q92743 480 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 HAVCR1Q96D42 359 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 RPS6KA6Q9UK32 745 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 RECQL5O94762 991 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 MICAL2O94851 1124 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CYP2C9P11712 490 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 PRKAR2AP13861 404 aaKnown RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 ZNF177Q13360 481 aaPredicted RBP9.96□□□□□ -0.82
COL6A3-201ENST00000295550 KCNMB4Q86W47 210 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 FBXO39Q8N4B4 442 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 MLXQ9UH92 298 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 DMTF1Q9Y222 760 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 N6AMT1Q9Y5N5 214 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 NUP205Q92621 2012 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 TMEM150BA6NC51 233 aa9.96□□□□□ -0.82
COL6A3-201ENST00000295550 CHURC1-FNTBB4DL54 471 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms