RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 COLGALT2Q8IYK4 626 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 PGAM4Q8N0Y7 254 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 BBS5Q8N3I7 341 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 KBTBD7Q8WVZ9 684 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 HSPH1Q92598 858 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 CPXM1Q96SM3 734 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 CYP3A43Q9HB55 503 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 PNPOQ9NVS9 261 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 MID2Q9UJV3 735 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 BCAS2O75934 225 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 SRGAP2BP0DMP2 458 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 IDO1P14902 403 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 CDH2P19022 906 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 RBL1P28749 1068 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 SLC5A2P31639 672 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 IRS1P35568 1242 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 GARSP41250 739 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 UBE3AQ05086 875 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 TRPC3Q13507 836 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 SPIDRQ14159 915 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 LRRC36Q1X8D7 754 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 ZNF699Q32M78 642 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 SEZ6Q53EL9 994 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 TIGD5Q53EQ6 642 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 C16orf46Q6P387 395 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 CHERPQ8IWX8 916 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 KYQ8NBH2 561 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 QKIQ96PU8 341 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 FAM193BQ96PV7 902 aaPredicted RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 FERMT1Q9BQL6 677 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 TMEM175Q9BSA9 504 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 VRTNQ9H8Y1 702 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 MRPL40Q9NQ50 206 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 MRGBPQ9NV56 204 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 FAIMQ9NVQ4 179 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 PCSK1NQ9UHG2 260 aa10.48□□□□□ -0.73
UPF3B-201ENST00000276201 CPSF3Q9UKF6 684 aaKnown RBP10.48□□□□□ -0.73
UPF3B-201ENST00000276201 HACD1B0YJ81 288 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 ERVFC1P60507 584 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 MMRN1Q13201 1228 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TAF5Q15542 800 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TCEAL5Q5H9L2 206 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 LRRC8BQ6P9F7 803 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 BNC2Q6ZN30 1099 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 UNC5BQ8IZJ1 945 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TTC39CQ8N584 583 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 FNDC8Q8TC99 324 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 HM13Q8TCT9 377 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 SREK1Q8WXA9 508 aaKnown RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 IGSF21Q96ID5 467 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 SNX27Q96L92 541 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 VN1R3Q9BXE9 311 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PCDH18Q9HCL0 1135 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PRDM6Q9NQX0 595 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 MARCH5Q9NX47 278 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TUBA8Q9NY65 449 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 CACNG4Q9UBN1 327 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 KIAA1257Q9ULG3 409 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PRUNE2Q8WUY3 3088 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 F8W810 466 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 SLCO1B7G3V0H7 640 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TPP1O14773 563 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 NRP1O14786 923 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 ZBTB14O43829 449 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PRPSAP2O60256 369 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TADA2AO75478 443 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 APRTP07741 180 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PGAM1P18669 254 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 GPD2P43304 727 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 XKR4Q5GH76 650 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 GLRA4Q5JXX5 417 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 GRTP1Q5TC63 336 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 ALKAL1Q6UXT8 129 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 Q6ZNX1 250 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 C10orf107Q8IVU9 208 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PHTF2Q8N3S3 785 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TAB3Q8N5C8 712 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 CNTD1Q8N815 330 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TMEM102Q8N9M5 508 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 RDH11Q8TC12 318 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 MTMR12Q9C0I1 747 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 NSUN3Q9H649 340 aaKnown RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TLR9Q9NR96 1032 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 RSL24D1Q9UHA3 163 aaKnown RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 PRG3Q9Y2Y8 225 aaPredicted RBP10.47□□□□□ -0.73
UPF3B-201ENST00000276201 TRIP11Q15643 1979 aa10.47□□□□□ -0.73
UPF3B-201ENST00000276201 CARNS1A5YM72 827 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 KPNA7A9QM74 516 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 MICAL2O94851 1124 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 SORBS2O94875 1100 aaKnown RBP10.46□□□□□ -0.73
UPF3B-201ENST00000276201 BMP10O95393 424 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 TNNC2P02585 160 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 MPOP05164 745 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 APOA4P06727 396 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 VDRP11473 427 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 PIK3R1P27986 724 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 ARRB2P32121 409 aa10.46□□□□□ -0.73
UPF3B-201ENST00000276201 TNFSF9P41273 254 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms