RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 NLNQ9BYT8 704 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 SLCO1B3Q9NPD5 702 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 ARHGEF3Q9NR81 526 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 KCNK4Q9NYG8 393 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 RPN2P04844 631 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 NOMO3P69849 1222 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 MSLNQ13421 630 aaPredicted RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 SPIDRQ14159 915 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 TARBP2Q15633 366 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 KIAA1324Q6UXG2 1013 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 SERPINA13PQ6UXR4 307 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 GPR142Q7Z601 462 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 COLGALT2Q8IYK4 626 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 CFAP52Q8N1V2 620 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 STK40Q8N2I9 435 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 SHC3Q92529 594 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 ZNF558Q96NG5 402 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 MRPL45Q9BRJ2 306 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 SIKE1Q9BRV8 207 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 NXF3Q9H4D5 531 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 REEP1Q9H902 201 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 TMPRSS4Q9NRS4 437 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 CDH9Q9ULB4 789 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 MYPNQ86TC9 1320 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 TK2O00142 265 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 MYL12BO14950 172 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 KCNH1O95259 989 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 PIK3R1P27986 724 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 SNRPD1P62314 119 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 NOL9Q5SY16 702 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 RBM23Q86U06 439 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 FAM20CQ8IXL6 584 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 KBTBD2Q8IY47 623 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 CXorf40AQ8TE69 158 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 ASZ1Q8WWH4 475 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 TEKT5Q96M29 485 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 MBOAT7Q96N66 472 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 PLK2Q9NYY3 685 aa11.58□□□□□ -0.56
USP53-201ENST00000274030 PPIEQ9UNP9 301 aaKnown RBP11.58□□□□□ -0.56
USP53-201ENST00000274030 CHURC1-FNTBB4DL54 471 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 BMP10O95393 424 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 EPHA3P29320 983 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 HOXA10P31260 410 aaPredicted RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 GPR1P46091 355 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 FKBP1CQ5VVH2 108 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 TRIQKQ629K1 86 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 TRPM4Q8TD43 1214 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 MRPL48Q96GC5 212 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 CAB39LQ9H9S4 337 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 ACSS2Q9NR19 701 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 MAP10Q9P2G4 905 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 COPG2Q9UBF2 871 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 LRCH1Q9Y2L9 728 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 MRPS23Q9Y3D9 190 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 GPSM3Q9Y4H4 160 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SF3B1O75533 1304 aaKnown RBP eCLIP11.57□□□□□ -0.561e-8■■■■■ 103.4
USP53-201ENST00000274030 VPS4BO75351 444 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 LRATO95237 230 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 IFNA16P05015 189 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SMAD3P84022 425 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP53-201ENST00000274030 TRIM32Q13049 653 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 APTXQ7Z2E3 356 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 IFNLR1Q8IU57 520 aaPredicted RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 NAT16Q8N8M0 369 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 JOSD2Q8TAC2 188 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 NDRG1Q92597 394 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 MRPS26Q9BYN8 205 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 TRAV19A0A0A6YYK7 116 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SMIM31A0A1B0GVY4 71 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 LYPLA1O75608 230 aaPredicted RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 TNFAIP8O95379 198 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 PSMG1O95456 288 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 HLA-DQA2P01906 255 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 ZNF37AP17032 561 aaPredicted RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 RPL38P63173 70 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 CPSF6Q16630 551 aaKnown RBP eCLIP11.57□□□□□ -0.56
USP53-201ENST00000274030 C18orf25Q96B23 403 aaPredicted RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 C9orf16Q9BUW7 83 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 ANAPC2Q9UJX6 822 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SNX3O60493 162 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 PEX10O60683 326 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 ANXA6P08133 673 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 TSPAN19P0C672 248 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 CDH13P55290 713 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 PPIDQ08752 370 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 SEMA5AQ13591 1074 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 FAM187BQ17R55 369 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 ZSWIM7Q19AV6 140 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 ZACNQ401N2 412 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 USP50Q70EL3 339 aaPredicted RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 IZUMO1Q8IYV9 350 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SLC4A5Q9BY07 1137 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SOHLH2Q9NX45 425 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 TPRKBQ9Y3C4 175 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 TNPO3Q9Y5L0 923 aaKnown RBP11.57□□□□□ -0.56
USP53-201ENST00000274030 USP32Q8NFA0 1604 aa11.57□□□□□ -0.56
USP53-201ENST00000274030 SLIT1O75093 1534 aa11.56□□□□□ -0.56
USP53-201ENST00000274030 hCG_1818297A0A087WSY0 165 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms