RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 YBEYP58557 167 aaPredicted RBP16.72■□□□□ 0.27
USP4-201ENST00000265560 CNGA3Q16281 694 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 CMTM8Q8IZV2 173 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 APCDD1Q8J025 514 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 TCP10LQ8TDR4 215 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 SH3RF2Q8TEC5 729 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 PDCD6IPQ8WUM4 868 aaKnown RBP16.72■□□□□ 0.27
USP4-201ENST00000265560 LINC00597Q9H2U6 94 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 NOD2Q9HC29 1040 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 TRAV19A0A0A6YYK7 116 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 GMNCA6NCL1 334 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 ERI2A8K979 691 aaKnown RBP16.72■□□□□ 0.27
USP4-201ENST00000265560 ADRA1DP25100 572 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 ADRA1AP35348 466 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 AVPR1AP37288 418 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 PPP3CCP48454 512 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 GPM6BQ13491 265 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 KDELC1Q6UW63 502 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 RANBP10Q6VN20 620 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 LRRC34Q8IZ02 419 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.72■□□□□ 0.27
USP4-201ENST00000265560 ACVR1CQ8NER5 493 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 GCNAQ96QF7 691 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 MTIF3Q9H2K0 278 aaKnown RBP16.72■□□□□ 0.27
USP4-201ENST00000265560 ASB3Q9Y575 518 aa16.72■□□□□ 0.27
USP4-201ENST00000265560 IQANK1A0A1B0GTG1 560 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 CCDC195A0A1B0GUA6 201 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 CLASP2O75122 1294 aaKnown RBP16.71■□□□□ 0.27
USP4-201ENST00000265560 PRAMEF12O95522 483 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 CSKP41240 450 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 TMPRSS15P98073 1019 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 STEAP4Q687X5 459 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 LRRC49Q8IUZ0 686 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 PDFQ9HBH1 243 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 PCMTD2Q9NV79 361 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 DONSONQ9NYP3 566 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 FCF1Q9Y324 198 aaKnown RBP16.71■□□□□ 0.27
USP4-201ENST00000265560 PCDHGC4Q9Y5F7 938 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 TCP11X1B4DZS4 312 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 OLFM2O95897 454 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 ARF5P84085 180 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 DMTNQ08495 405 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 CTBP1Q13363 440 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 C5orf22Q49AR2 442 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 PPM1JQ5JR12 505 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 TMCO4Q5TGY1 634 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 LVRNQ6Q4G3 990 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 FAM47EQ6ZV65 393 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 TMEM135Q86UB9 458 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 MFN1Q8IWA4 741 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 GDPD5Q8WTR4 605 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 RPL10LQ96L21 214 aaKnown RBP16.71■□□□□ 0.27
USP4-201ENST00000265560 HTATIP2Q9BUP3 242 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 TM6SF2Q9BZW4 377 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 IL22Q9GZX6 179 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 MAGEH1Q9H213 219 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 CAB39LQ9H9S4 337 aa16.71■□□□□ 0.27
USP4-201ENST00000265560 UBA2Q9UBT2 640 aaPredicted RBP16.71■□□□□ 0.27
USP4-201ENST00000265560 BNIP3LO60238 219 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 MOSPD3O75425 235 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 TSHRP16473 764 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 GBP2P32456 591 aaPredicted RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 TTC39BQ5VTQ0 682 aaPredicted RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 FEM1AQ9BSK4 669 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 IGFLR1Q9H665 355 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 CHKBQ9Y259 395 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 FNDC3AQ9Y2H6 1198 aaKnown RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 FAM169AQ9Y6X4 670 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 CCDC85CA6NKD9 419 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 TRIM24O15164 1050 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 TYROBPO43914 113 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 SNRPAP09012 282 aaKnown RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 FOXN2P32314 431 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 SIRPB2Q5JXA9 342 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 ATXN7L2Q5T6C5 722 aaPredicted RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 Q6ZNB5 142 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 CPLX4Q7Z7G2 160 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 CMC1Q7Z7K0 106 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 LINC00523Q86TU6 105 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 DENND6AQ8IWF6 608 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 BLOC1S5Q8TDH9 187 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 FAM111AQ96PZ2 611 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 CINPQ9BW66 212 aaPredicted RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 ALDH1A2O94788 518 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 WEE1P30291 646 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 GKP32189 559 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 NPY2RP49146 381 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 DLG2Q15700 870 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 PACS1Q6VY07 963 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 STRA8Q7Z7C7 330 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 LDB1Q86U70 411 aaPredicted RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 KCNMB4Q86W47 210 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 TMEM25Q86YD3 366 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 TEX26Q8N6G2 289 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 POLR1EQ9GZS1 481 aaKnown RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 LSM7Q9UK45 103 aaKnown RBP16.7■□□□□ 0.26
USP4-201ENST00000265560 ANKRD36A6QL64 1941 aa16.7■□□□□ 0.26
USP4-201ENST00000265560 TRIOBPQ9H2D6 2365 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 KRT37O76014 449 aa16.69■□□□□ 0.26
USP4-201ENST00000265560 CD160O95971 181 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms