RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 SIN3BO75182 1162 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 CXCL10P02778 98 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 ATF6P18850 670 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 TACR2P21452 398 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 CALB2P22676 271 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 OR1E1P30953 314 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 GMPRP36959 345 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 CD86P42081 329 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 ARCN1P48444 511 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 TUFMP49411 452 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 VEGFBP49765 207 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 CCL23P55773 120 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 YBEYP58557 167 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 TNK2Q07912 1038 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 IL10RBQ08334 325 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 USP10Q14694 798 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 DLG2Q15700 870 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 USP41Q3LFD5 358 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 KIAA0930Q6ICG6 404 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 ALYREFQ86V81 257 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 LCA5Q86VQ0 697 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 SLC25A41Q8N5S1 370 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 TEX26Q8N6G2 289 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 GABPB2Q8TAK5 448 aaPredicted RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 PTCD3Q96EY7 689 aaKnown RBP13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 RILPQ96NA2 401 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 KLHL5Q96PQ7 755 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 TBC1D10AQ9BXI6 508 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 FAM96AQ9H5X1 160 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 NMRAL1Q9HBL8 299 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 TREX1Q9NSU2 369 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 ARL8BQ9NVJ2 186 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 ZNF212Q9UDV6 495 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 DNMT3LQ9UJW3 386 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 DNAJC16Q9Y2G8 782 aa13.1□□□□□ -0.31
SPTLC1-201ENST00000262554 F5H5T6 163 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 ITM2AO43736 263 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 H2AFYO75367 372 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 LYPLA1O75608 230 aaPredicted RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 AHSGP02765 367 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 ATP5C1P36542 298 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 CHRNA4P43681 627 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 SERPINH1P50454 418 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 ABCE1P61221 599 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 MAXP61244 160 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 IRF9Q00978 393 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 SERINC3Q13530 473 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 CNGA3Q16281 694 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 NADSYN1Q6IA69 706 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 SLC8B1Q6J4K2 584 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 LONP2Q86WA8 852 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 TNS4Q8IZW8 715 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 PDZD8Q8NEN9 1154 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 UTP4Q969X6 686 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 DEFB118Q96PH6 123 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 RANBP9Q96S59 729 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 NMUR2Q9GZQ4 415 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 NACA2Q9H009 215 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 STN1Q9H668 368 aaKnown RBP13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 CD248Q9HCU0 757 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 ATP13A1Q9HD20 1204 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 MTRRQ9UBK8 725 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 SLC2A6Q9UGQ3 507 aa13.09□□□□□ -0.31
SPTLC1-201ENST00000262554 MYCP01106 439 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 ESRRAP11474 423 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 COL6A2P12110 1019 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 SAT1P21673 171 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 DNAJB1P25685 340 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 CSRP3P50461 194 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 DSC2Q02487 901 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 CTBP1Q13363 440 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 SLC12A1Q13621 1099 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 ITGA9Q13797 1035 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 HSF5Q4G112 596 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 DEFB128Q7Z7B8 93 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 TTC7BQ86TV6 843 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 CIR1Q86X95 450 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 DENND6AQ8IWF6 608 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 LGI2Q8N0V4 545 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 ACVR1CQ8NER5 493 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 RDH11Q8TC12 318 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 CALML6Q8TD86 181 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 OVCA2Q8WZ82 227 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 PRR11Q96HE9 360 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 ZNF512Q96ME7 567 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 TLE6Q9H808 572 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 PAK6Q9NQU5 681 aaPredicted RBP13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 BACE2Q9Y5Z0 518 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 A8MUI8 341 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 TMEM114B3SHH9 223 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 G3V2L1 256 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 ADAM12O43184 909 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 WFS1O76024 890 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 UPP2O95045 317 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 MMP2P08253 660 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 ARNTP27540 789 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 GABRB3P28472 473 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 OR1D2P34982 312 aa13.08□□□□□ -0.32
SPTLC1-201ENST00000262554 SLC1A2P43004 574 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms