RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SNX32Q86XE0 403 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 FSTL5Q8N475 847 aaPredicted RBP12.95□□□□□ -0.34
LINC00540-203ENST00000631321 KYQ8NBH2 561 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 KCTD4Q8WVF5 259 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 MYLPFQ96A32 169 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 GAD1Q99259 594 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 SERPINI1Q99574 410 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 GLOD4Q9HC38 313 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 FAM105AQ9NUU6 356 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.95□□□□□ -0.34
LINC00540-203ENST00000631321 ZDHHC2Q9UIJ5 367 aa12.95□□□□□ -0.34
LINC00540-203ENST00000631321 DLX3O60479 287 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SNUPNO95149 360 aaKnown RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ARNTP27540 789 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SERPINB5P36952 375 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 NAGLUP54802 743 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 RAB10P61026 200 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 MAP2K5Q13163 448 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GRM2Q14416 872 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ARTNQ5T4W7 220 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 TAF2Q6P1X5 1199 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SLC30A9Q6PML9 568 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 POTEHQ6S545 545 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SLC41A1Q8IVJ1 513 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 DSELQ8IZU8 1212 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GALNT15Q8N3T1 639 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ZFAND2BQ8WV99 257 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 PPP1R2P1Q96PQ5 205 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 BTBD9Q96Q07 612 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 TRIM62Q9BVG3 475 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 PIDD1Q9HB75 910 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 MIOSQ9NXC5 875 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 FLRT1Q9NZU1 646 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 C6orf203Q9P0P8 240 aaPredicted RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 PSMD13Q9UNM6 376 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ACOT9Q9Y305 439 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GOLGA8QA0A0J9YX86 632 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GOLGA8OA6NCC3 632 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GOLGA8NF8WBI6 632 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 NPHS1O60500 1241 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 PGK1P00558 417 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ZCCHC18P0CG32 403 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 CD1EP15812 388 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 EPHA3P29320 983 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 CCR10P46092 362 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 AFF1P51825 1210 aaKnown RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 AQP4P55087 323 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 CYLC2Q14093 348 aaPredicted RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 MANEALQ5VSG8 457 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ARMC3Q5W041 872 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ARHGAP36Q6ZRI8 547 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 MFSD6LQ8IWD5 586 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 LZTR1Q8N653 840 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 EFCAB3Q8N7B9 438 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SPDYE1Q8NFV5 336 aaPredicted RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SPATA22Q8NHS9 363 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 AGR3Q8TD06 166 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 ZNF419Q96HQ0 510 aaPredicted RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 SCYL1Q96KG9 808 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GBP5Q96PP8 586 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 HAPLN3Q96S86 360 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 PTPN18Q99952 460 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 DDX50Q9BQ39 737 aaKnown RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 RHOBTB2Q9BYZ6 727 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 PAPOLBQ9NRJ5 636 aaKnown RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 CDYLQ9Y232 598 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 GIT1Q9Y2X7 761 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 TCAF1Q9Y4C2 921 aa12.94□□□□□ -0.34
LINC00540-203ENST00000631321 FNDC1Q4ZHG4 1894 aaPredicted RBP12.94□□□□□ -0.34
LINC00540-203ENST00000631321 KIF3CO14782 793 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MATN3O15232 486 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MAFKO60675 156 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 VCLP18206 1134 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 NUDT2P50583 147 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PAPOLAP51003 745 aaKnown RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 GEMP55040 296 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MRPS6P82932 125 aaKnown RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MED21Q13503 144 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 RFTN1Q14699 578 aaPredicted RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 TRIP10Q15642 601 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ZNF423Q2M1K9 1284 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PIGGQ5H8A4 983 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 BRMS1LQ5PSV4 323 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PPM1LQ5SGD2 360 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 TSTD2Q5T7W7 516 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 SDCCAG8Q86SQ7 713 aaPredicted RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 TMEM126BQ8IUX1 230 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ATPAF2Q8N5M1 289 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 KDM1BQ8NB78 822 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PPHLN1Q8NEY8 458 aaKnown RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 USP33Q8TEY7 942 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MOCOSQ96EN8 888 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 MAELQ96JY0 434 aaKnown RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 PKMYT1Q99640 499 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 ACBD6Q9BR61 282 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 NUF2Q9BZD4 464 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 UBE2OQ9C0C9 1292 aaKnown RBP12.93□□□□□ -0.34
LINC00540-203ENST00000631321 CHST12Q9NRB3 414 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 TREX1Q9NSU2 369 aa12.93□□□□□ -0.34
LINC00540-203ENST00000631321 XPR1Q9UBH6 696 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms