RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 KNL1Q8NG31 2342 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 LRRC72A6NJI9 287 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 METTL12A8MUP2 240 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 KPNA3O00505 521 aaPredicted RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 POP4O95707 220 aaKnown RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 CD48P09326 243 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 COMTP21964 271 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 CCNHP51946 323 aaPredicted RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 RAD51Q06609 339 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 ANKRD20A8PQ5CZ79 823 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 ARSIQ5FYB1 569 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 RABEPKQ7Z6M1 372 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 KIAA1328Q86T90 577 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 ARHGAP12Q8IWW6 846 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 RHOT1Q8IXI2 618 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 OR2AP1Q8NGE2 309 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 PPP1R16AQ96I34 528 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 LRIG1Q96JA1 1093 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 SP110Q9HB58 689 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 ETNK2Q9NVF9 386 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 KLHL11Q9NVR0 708 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 SERGEFQ9UGK8 458 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 PILRBQ9UKJ0 227 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 TFR2Q9UP52 801 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 TRPM6Q9BX84 2022 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 J3KR12 359 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 SLC7A4O43246 635 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 BUB1BO60566 1050 aaPredicted RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 CTSLP07711 333 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 KDELR1P24390 212 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 DRD3P35462 400 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 RHOAP61586 193 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 IL10RBQ08334 325 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 CCDC6Q16204 474 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 DCAF12L1Q5VU92 463 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 C12orf50Q8NA57 414 aaPredicted RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 GRIN3AQ8TCU5 1115 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 GDAP1L1Q96MZ0 367 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 PDFQ9HBH1 243 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 DDX56Q9NY93 547 aaKnown RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 IPO11Q9UI26 975 aaKnown RBP21.06■□□□□ 0.96
CLN3-240ENST00000631023 ALG6Q9Y672 507 aa21.06■□□□□ 0.96
CLN3-240ENST00000631023 FAM47DPA6NHR8 397 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 KHNYNO15037 678 aaKnown RBP21.05■□□□□ 0.96
CLN3-240ENST00000631023 LEFTY1O75610 366 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 PALMO75781 387 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 GNSP15586 552 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 VAV2P52735 878 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 NAP1L1P55209 391 aaKnown RBP21.05■□□□□ 0.96
CLN3-240ENST00000631023 LMNB2Q03252 620 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 MYLK3Q32MK0 819 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 POM121L1PQ3SYA9 428 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 PRR23CQ6ZRP0 262 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 VSIG1Q86XK7 387 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 LRRC49Q8IUZ0 686 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 ACRBPQ8NEB7 543 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 OR2T34Q8NGX1 318 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 OR14C36Q8NHC7 312 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 CEP76Q8TAP6 659 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 DNASE2BQ8WZ79 361 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 KDM4CQ9H3R0 1056 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 C6orf106Q9H6K1 298 aaPredicted RBP21.05■□□□□ 0.96
CLN3-240ENST00000631023 ZDHHC6Q9H6R6 413 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 SUSD2Q9UGT4 822 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 REXO2Q9Y3B8 237 aaKnown RBP21.05■□□□□ 0.96
CLN3-240ENST00000631023 MFHAS1Q9Y4C4 1052 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 WASF2Q9Y6W5 498 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 ADAMTS9Q9P2N4 1935 aa21.05■□□□□ 0.96
CLN3-240ENST00000631023 CEP250Q9BV73 2442 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 LRRD1A4D1F6 860 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 GOLGA6L3A6NEY3 463 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 BTNL10A8MVZ5 291 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 KRIT1O00522 736 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 IGSF6O95976 241 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 CNTN1Q12860 1018 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 RFTN1Q14699 578 aaPredicted RBP21.04■□□□□ 0.96
CLN3-240ENST00000631023 DUOXA1Q1HG43 343 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 C11orf63Q6NUN7 778 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 NETO2Q8NC67 525 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 PCDH19Q8TAB3 1148 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 RAPGEF5Q92565 580 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 GRPEL1Q9HAV7 217 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 TMEM74BQ9NUR3 256 aa21.04■□□□□ 0.96
CLN3-240ENST00000631023 ZNF487B1APH4 448 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 PJA2O43164 708 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 PSTPIP1O43586 416 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 TNNT1P13805 278 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 METAP1P53582 386 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 ADPRHP54922 357 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 CYTH1Q15438 398 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 PEAR1Q5VY43 1037 aaPredicted RBP21.03■□□□□ 0.96
CLN3-240ENST00000631023 KIAA0895LQ68EN5 471 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 NCEH1Q6PIU2 408 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 DAAM2Q86T65 1068 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 ATPAF2Q8N5M1 289 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 TPCN2Q8NHX9 752 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 SNX19Q92543 992 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 FAM131CQ96AQ9 280 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 FAF2Q96CS3 445 aa21.03■□□□□ 0.96
CLN3-240ENST00000631023 ZNF599Q96NL3 588 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms