RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PCDH20Q8N6Y1 951 aaKnown RBP18.42■□□□□ 0.54
CLN3-239ENST00000628023 LRRC57Q8N9N7 239 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 FRS2Q8WU20 508 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 KRT35Q92764 455 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 PTPRN2Q92932 1015 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 RBM41Q96IZ5 413 aaKnown RBP18.42■□□□□ 0.54
CLN3-239ENST00000628023 RNF157Q96PX1 679 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 ALS2CR12Q96Q35 445 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 TNKS2Q9H2K2 1166 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 RXFP3Q9NSD7 469 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 CAPN6Q9Y6Q1 641 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 CHD5Q8TDI0 1954 aa18.42■□□□□ 0.54
CLN3-239ENST00000628023 CCDC66A2RUB6 948 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 C3orf70A6NLC5 250 aaPredicted RBP18.41■□□□□ 0.54
CLN3-239ENST00000628023 ZNF487B1APH4 448 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 APOL1O14791 398 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 ZNF217O75362 1048 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 TMCC1O94876 653 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 ZRANB2O95218 330 aaKnown RBP eCLIP18.41■□□□□ 0.54
CLN3-239ENST00000628023 FTCDO95954 541 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 ZFXP17010 805 aaPredicted RBP18.41■□□□□ 0.54
CLN3-239ENST00000628023 CTNNA2P26232 953 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 PSMD8P48556 350 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 TTC31Q49AM3 519 aaPredicted RBP18.41■□□□□ 0.54
CLN3-239ENST00000628023 MFSD7Q6UXD7 560 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 CYP2U1Q7Z449 544 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 MMAAQ8IVH4 418 aaKnown RBP18.41■□□□□ 0.54
CLN3-239ENST00000628023 RCOR2Q8IZ40 523 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 UBL4BQ8N7F7 174 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 GANCQ8TET4 914 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 CASKIN2Q8WXE0 1202 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 RLN3Q8WXF3 142 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 EDEM2Q9BV94 578 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 TM6SF2Q9BZW4 377 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 RSPH9Q9H1X1 276 aaPredicted RBP18.41■□□□□ 0.54
CLN3-239ENST00000628023 KCNF1Q9H3M0 494 aa18.41■□□□□ 0.54
CLN3-239ENST00000628023 IPO11Q9UI26 975 aaKnown RBP18.41■□□□□ 0.54
CLN3-239ENST00000628023 NUP205Q92621 2012 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 ABCA7Q8IZY2 2146 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 J3KR12 359 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 KHNYNO15037 678 aaKnown RBP18.4■□□□□ 0.54
CLN3-239ENST00000628023 PRAMEF11O60813 436 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 IL1BP01584 269 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 DHPSP49366 369 aaPredicted RBP18.4■□□□□ 0.54
CLN3-239ENST00000628023 RWDD2BP57060 319 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 RPS14P62263 151 aaKnown RBP18.4■□□□□ 0.54
CLN3-239ENST00000628023 DYNLT1P63172 113 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 PAFAH1B3Q15102 231 aaKnown RBP18.4■□□□□ 0.54
CLN3-239ENST00000628023 KAZNQ674X7 775 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 SPOCD1Q6ZMY3 1216 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 ARHGAP36Q6ZRI8 547 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 ZNF662Q6ZS27 426 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 LPCAT2Q7L5N7 544 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 NT5DC3Q86UY8 548 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 TP53INP2Q8IXH6 220 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 PQLC3Q8N755 202 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 EXD1Q8NHP7 514 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 NSMCE1Q8WV22 266 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 CYP8B1Q9UNU6 501 aa18.4■□□□□ 0.54
CLN3-239ENST00000628023 THADAQ6YHU6 1953 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 MIF4GDA9UHW6 222 aaKnown RBP18.39■□□□□ 0.53
CLN3-239ENST00000628023 C1QTNF3-AMACRE9PGA6 284 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 TM4SF5O14894 197 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 ALOX15BO15296 676 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 MAP3K6O95382 1288 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 CD160O95971 181 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 CETN2P41208 172 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 CDKN2BP42772 138 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 RHOAP61586 193 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 SNRPD1P62314 119 aaKnown RBP18.39■□□□□ 0.53
CLN3-239ENST00000628023 ZBTB16Q05516 673 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 IL10RBQ08334 325 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 TFDP2Q14188 446 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 LLGL1Q15334 1064 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 CST6Q15828 149 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 INO80DQ53TQ3 878 aaPredicted RBP18.39■□□□□ 0.53
CLN3-239ENST00000628023 TFDP3Q5H9I0 405 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 TCEAL6Q6IPX3 200 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 OR2A12Q8NGT7 310 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 GRIN3AQ8TCU5 1115 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 TCEAL3Q969E4 200 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 ISG20Q96AZ6 181 aaKnown RBP18.39■□□□□ 0.53
CLN3-239ENST00000628023 CINPQ9BW66 212 aaPredicted RBP18.39■□□□□ 0.53
CLN3-239ENST00000628023 PDFQ9HBH1 243 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 PACSIN2Q9UNF0 486 aaPredicted RBP18.39■□□□□ 0.53
CLN3-239ENST00000628023 PCDHA3Q9Y5H8 950 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 HEY1Q9Y5J3 304 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 EPG5Q9HCE0 2579 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 CACNA1BQ00975 2339 aa18.39■□□□□ 0.53
CLN3-239ENST00000628023 NYNRINQ9P2P1 1898 aaKnown RBP18.38■□□□□ 0.53
CLN3-239ENST00000628023 MCF2LO15068 1137 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 ADH1BP00325 375 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 GSRP00390 522 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 KRT10P13645 584 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 MX2P20592 715 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 P2RY2P41231 377 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 GBE1Q04446 702 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 SFSWAPQ12872 951 aaKnown RBP18.38■□□□□ 0.53
CLN3-239ENST00000628023 CARD16Q5EG05 197 aa18.38■□□□□ 0.53
CLN3-239ENST00000628023 FAM46CQ5VWP2 391 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms