RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 FSTL4Q6MZW2 842 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 DDX53Q86TM3 631 aaKnown RBP22.37■■□□□ 1.17
PNKP-220ENST00000627232 ZNF354CQ86Y25 554 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 PABPC5Q96DU9 382 aaKnown RBP22.37■■□□□ 1.17
PNKP-220ENST00000627232 ZNF333Q96JL9 665 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 MAGEH1Q9H213 219 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 CYP4F11Q9HBI6 524 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 NPHS2Q9NP85 383 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 SPG21Q9NZD8 308 aa22.37■■□□□ 1.17
PNKP-220ENST00000627232 COCHO43405 550 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 PLIN3O60664 434 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 SIN3BO75182 1162 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 GJB5O95377 273 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 SLC6A4P31645 630 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 CDH4P55283 916 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 LBRQ14739 615 aaKnown RBP22.36■■□□□ 1.17
PNKP-220ENST00000627232 POU6F1Q14863 301 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 UGP2Q16851 508 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 RABGAP1LQ5R372 815 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 TMCO4Q5TGY1 634 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 KIAA0930Q6ICG6 404 aaPredicted RBP22.36■■□□□ 1.17
PNKP-220ENST00000627232 CIR1Q86X95 450 aaPredicted RBP22.36■■□□□ 1.17
PNKP-220ENST00000627232 GPR65Q8IYL9 337 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 MYEOVQ96EZ4 313 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 THOC1Q96FV9 657 aaKnown RBP22.36■■□□□ 1.17
PNKP-220ENST00000627232 ZNF778Q96MU6 729 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 KLHL5Q96PQ7 755 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 TREX1Q9NSU2 369 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 GGT7Q9UJ14 662 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 EMCNQ9ULC0 261 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 ANAPC1Q9H1A4 1944 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 URODP06132 367 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 MMP2P08253 660 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 SKIV2L2P42285 1042 aaKnown RBP22.36■■□□□ 1.17
PNKP-220ENST00000627232 POLD2P49005 469 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 TMPRSS15P98073 1019 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 CDK18Q07002 472 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 ITKQ08881 620 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 BTG3Q14201 252 aaPredicted RBP22.36■■□□□ 1.17
PNKP-220ENST00000627232 CHI3L2Q15782 390 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 TAF12Q16514 161 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 NLRP9Q7RTR0 991 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 VPS39Q96JC1 886 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 LRRC37BQ96QE4 947 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 GPR22Q99680 433 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 MECRQ9BV79 373 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 RHOJQ9H4E5 214 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 CHKBQ9Y259 395 aa22.36■■□□□ 1.17
PNKP-220ENST00000627232 HEATR9A2RTY3 570 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 CFAP73A6NFT4 308 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 TIMP1P01033 207 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 PROCP04070 461 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 CD86P42081 329 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 ARCN1P48444 511 aaKnown RBP22.35■■□□□ 1.17
PNKP-220ENST00000627232 SERPINH1P50454 418 aaKnown RBP22.35■■□□□ 1.17
PNKP-220ENST00000627232 DEFB103AP81534 67 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 DSC2Q02487 901 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 BST1Q10588 318 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 SMAD1Q15797 465 aaKnown RBP22.35■■□□□ 1.17
PNKP-220ENST00000627232 CCDC153Q494R4 210 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 ARRDC2Q8TBH0 407 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 PDFQ9HBH1 243 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 UXTQ9UBK9 157 aaPredicted RBP22.35■■□□□ 1.17
PNKP-220ENST00000627232 MTO1Q9Y2Z2 717 aaKnown RBP22.35■■□□□ 1.17
PNKP-220ENST00000627232 KIAA1671Q9BY89 1806 aa22.35■■□□□ 1.17
PNKP-220ENST00000627232 SNNO75324 88 aaPredicted RBP22.34■■□□□ 1.17
PNKP-220ENST00000627232 ATP5HO75947 161 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 STC2O76061 302 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 GSRP00390 522 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 ACVRL1P37023 503 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 NCALDP61601 193 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 OCRLQ01968 901 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 OVGP1Q12889 678 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 SLC14A2Q15849 920 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 PCSK7Q16549 785 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 CHST9Q7L1S5 443 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 TCEAL8Q8IYN2 117 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 PGBD5Q8N414 524 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 RFWD2Q8NHY2 731 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 DDX50Q9BQ39 737 aaKnown RBP22.34■■□□□ 1.17
PNKP-220ENST00000627232 FAM167BQ9BTA0 163 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 KLF16Q9BXK1 252 aaPredicted RBP22.34■■□□□ 1.17
PNKP-220ENST00000627232 POLR1EQ9GZS1 481 aaKnown RBP22.34■■□□□ 1.17
PNKP-220ENST00000627232 MYLK2Q9H1R3 596 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 C11orf49Q9H6J7 331 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 ECT2Q9H8V3 914 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 ANKRD6Q9Y2G4 727 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 ZFP37Q9Y6Q3 630 aaPredicted RBP22.34■■□□□ 1.17
PNKP-220ENST00000627232 PLXNA4Q9HCM2 1894 aa22.34■■□□□ 1.17
PNKP-220ENST00000627232 CLDN11O75508 207 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 PAPSS2O95340 614 aaPredicted RBP22.33■■□□□ 1.17
PNKP-220ENST00000627232 TOP3BO95985 862 aaKnown RBP22.33■■□□□ 1.17
PNKP-220ENST00000627232 DNAJB1P25685 340 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 CSRP3P50461 194 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 MAXP61244 160 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 WDR5P61964 334 aaKnown RBP22.33■■□□□ 1.17
PNKP-220ENST00000627232 GNA12Q03113 381 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 STX3Q13277 289 aa22.33■■□□□ 1.17
PNKP-220ENST00000627232 FASTKD1Q53R41 847 aaKnown RBP22.33■■□□□ 1.17
PNKP-220ENST00000627232 ALG1LQ6GMV1 187 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms