RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 LHX5Q9H2C1 402 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 ARHGAP28Q9P2N2 729 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 SNX8Q9Y5X2 465 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 IGLV3-22A0A075B6J6 115 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 PLSCR1O15162 318 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 SHOX2O60902 331 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 BPGMP07738 259 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CHN2P52757 468 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 FSTL1Q12841 308 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 DGCR6LQ9BY27 220 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 RIBC2Q9H4K1 309 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CAB39LQ9H9S4 337 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CAB39Q9Y376 341 aaPredicted RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CAMTA1Q9Y6Y1 1673 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 FAM20BO75063 409 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CABYRO75952 493 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 HGFP14210 728 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 GSTT1P30711 240 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CDKN2BP42772 138 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 RPS7P62081 194 aaKnown RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 HSPA14Q0VDF9 509 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 PDK3Q15120 406 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 CAMKK2Q96RR4 588 aa14.17□□□□□ -0.14
CPSF1-212ENST00000616140 RPL26L1Q9UNX3 145 aaKnown RBP14.17□□□□□ -0.14
CPSF1-212ENST00000616140 B4GALT4O60513 344 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 FAM155BO75949 473 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 FARP2O94887 1054 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 CREB1P16220 341 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 GRK3P35626 688 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 MRPS5P82675 430 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 DGCR6Q14129 220 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 SDE2Q6IQ49 451 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 MON1BQ7L1V2 547 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 TRIM48Q8IWZ4 208 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 MAGED4Q96JG8 741 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 PANX3Q96QZ0 392 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 NXF3Q9H4D5 531 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 DNM1LO00429 736 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 C4BPAP04003 597 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 NTRK1P04629 796 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 TUFMP49411 452 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 C1DQ13901 141 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 CRY1Q16526 586 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 DDR2Q16832 855 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 KCTD21Q4G0X4 260 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 SWT1Q5T5J6 900 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 LIPMQ5VYY2 423 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 AMIGO2Q86SJ2 522 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 HEATR4Q86WZ0 1026 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 OR8H2Q8N162 312 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 KRT78Q8N1N4 520 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 RP9Q8TA86 221 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 C18orf25Q96B23 403 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 EXOC2Q96KP1 924 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 MRPL57Q9BQC6 102 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 MRPL45Q9BRJ2 306 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 WDR55Q9H6Y2 383 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 SPAG4Q9NPE6 437 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 CDH9Q9ULB4 789 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 URB1O60287 2271 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 C2orf71A6NGG8 1288 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 RGS14O43566 566 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 ATP5C1P36542 298 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 STXBP5Q5T5C0 1151 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 ARHGAP17Q68EM7 881 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 TYW3Q6IPR3 259 aaKnown RBP14.16□□□□□ -0.14
CPSF1-212ENST00000616140 CYP4Z1Q86W10 505 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 PLD5Q8N7P1 536 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 TM6SF2Q9BZW4 377 aa14.16□□□□□ -0.14
CPSF1-212ENST00000616140 A8MUI8 341 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 GSC2O15499 205 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 FECHP22830 423 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 TKTP29401 623 aaKnown RBP14.15□□□□□ -0.14
CPSF1-212ENST00000616140 ZIK1Q3SY52 487 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-212ENST00000616140 CERCAMQ5T4B2 595 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 OOSP2Q86WS3 158 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 NKAPQ8N5F7 415 aaKnown RBP14.15□□□□□ -0.14
CPSF1-212ENST00000616140 CDYL2Q8N8U2 506 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 SETD9Q8NE22 299 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 ZNF384Q8TF68 577 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 SELENOMQ8WWX9 145 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 LPPQ93052 612 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 CSPG4P5Q96PW8 444 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 PLLPQ9Y342 182 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 TNPO3Q9Y5L0 923 aaKnown RBP14.15□□□□□ -0.14
CPSF1-212ENST00000616140 OR56A5P0C7T3 313 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 SMIM10L2AP0DMW4 78 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 SMIM10L2BP0DMW5 78 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 FGFR1P11362 822 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 TYMPP19971 482 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 ARMC6Q6NXE6 501 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 LCLAT1Q6UWP7 414 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 MOB2Q70IA6 237 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 HDAC10Q969S8 669 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 SERAC1Q96JX3 654 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 SLC4A5Q9BY07 1137 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 FAM126AQ9BYI3 521 aaPredicted RBP14.15□□□□□ -0.14
CPSF1-212ENST00000616140 ST6GALNAC4Q9H4F1 302 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 CNGB3Q9NQW8 809 aa14.15□□□□□ -0.14
CPSF1-212ENST00000616140 DUSP12Q9UNI6 340 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms