RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 PDFQ9HBH1 243 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 DYRK4Q9NR20 520 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 HECAQ9UBI9 543 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 UBA2Q9UBT2 640 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 SUSD2Q9UGT4 822 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 EPN1Q9Y6I3 576 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-215ENST00000601150 WASF2Q9Y6W5 498 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 ADAMTS9Q9P2N4 1935 aa17.15■□□□□ 0.34
TRIM28-215ENST00000601150 PLXNA2O75051 1894 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 FAM47DPA6NHR8 397 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 J3KR12 359 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 DFFAO00273 331 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 PLK4O00444 970 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 PRAMEF11O60813 436 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 NDUFA10O95299 355 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 IPO7O95373 1038 aaKnown RBP17.14■□□□□ 0.33
TRIM28-215ENST00000601150 CFIP05156 583 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 GNSP15586 552 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 MAOBP27338 520 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 ADPRHP54922 357 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 HADHBP55084 474 aaKnown RBP17.14■□□□□ 0.33
TRIM28-215ENST00000601150 RHOAP61586 193 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 CCDC15Q0P6D6 951 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 CNTN1Q12860 1018 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 PDK2Q15119 407 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 ATP13A4Q4VNC1 1196 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 TRIM61Q5EBN2 209 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 KIAA0895LQ68EN5 471 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 SLC23A3Q6PIS1 610 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 NCEH1Q6PIU2 408 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 MAP7D3Q8IWC1 876 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 RYBPQ8N488 228 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-215ENST00000601150 SPC24Q8NBT2 197 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 KCTD6Q8NC69 237 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 OR2AP1Q8NGE2 309 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 OR14C36Q8NHC7 312 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 SNX19Q92543 992 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 PPP1R16AQ96I34 528 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 GDAP1L1Q96MZ0 367 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 NUSAP1Q9BXS6 441 aaKnown RBP17.14■□□□□ 0.33
TRIM28-215ENST00000601150 CALN1Q9BXU9 219 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 MIR1-1HGQ9H1L0 117 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 KDM4CQ9H3R0 1056 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 ETNK2Q9NVF9 386 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 SLC6A14Q9UN76 642 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 MFHAS1Q9Y4C4 1052 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 SHROOM3Q8TF72 1996 aa17.14■□□□□ 0.33
TRIM28-215ENST00000601150 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-215ENST00000601150 GOLGA6L6A8MZA4 724 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 GDF9O60383 454 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 LEFTY1O75610 366 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 FSBPO95073 299 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 IGSF6O95976 241 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 SERPINF2P08697 491 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 CD48P09326 243 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 SDHBP21912 280 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 IL4RP24394 825 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 SERPINB6P35237 376 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 SLC1A1P43005 524 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 NOP2P46087 812 aaKnown RBP17.13■□□□□ 0.33
TRIM28-215ENST00000601150 IRX4P78413 519 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 MMRN1Q13201 1228 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 DPYSL3Q14195 570 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 ZFYVE27Q5T4F4 411 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 AGBL4Q5VU57 503 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 NETO2Q8NC67 525 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 NETO1Q8TDF5 533 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 ARRDC3Q96B67 414 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 BIRC7Q96CA5 298 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 LRIG1Q96JA1 1093 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 BAG1Q99933 345 aaPredicted RBP17.13■□□□□ 0.33
TRIM28-215ENST00000601150 ZNF670Q9BS34 389 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 ZDHHC6Q9H6R6 413 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 SP110Q9HB58 689 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 EIF2B4Q9UI10 523 aaKnown RBP17.13■□□□□ 0.33
TRIM28-215ENST00000601150 CDV3Q9UKY7 258 aaKnown RBP17.13■□□□□ 0.33
TRIM28-215ENST00000601150 PCDH15Q96QU1 1955 aa17.13■□□□□ 0.33
TRIM28-215ENST00000601150 ANKRD36A6QL64 1941 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 CFAP54Q96N23 3096 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 A0A0A6YYK5 440 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 A0A1B0GTW7 788 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 LNP1A1A4G5 178 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 KRIT1O00522 736 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 PLRG1O43660 514 aaKnown RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 POP4O95707 220 aaKnown RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 IGHV4-34P06331 123 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 CCR5P51681 352 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 IL10RBQ08334 325 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 CYTH1Q15438 398 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 RSPO4Q2I0M5 234 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 MYLK3Q32MK0 819 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 ATXN7L2Q5T6C5 722 aaPredicted RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 RAD9BQ6WBX8 426 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 ZCCHC9Q8N567 271 aaKnown RBP17.12■□□□□ 0.33
TRIM28-215ENST00000601150 OR6K2Q8NGY2 324 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 EDEM2Q9BV94 578 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 HDAC8Q9BY41 377 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 RXFP3Q9NSD7 469 aa17.12■□□□□ 0.33
TRIM28-215ENST00000601150 KLHL11Q9NVR0 708 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms