RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 HSPA14Q0VDF9 509 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 RAD9BQ6WBX8 426 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 KIAA2013Q8IYS2 634 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 WFIKKN2Q8TEU8 576 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 FPGSQ05932 587 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 PMF1Q6P1K2 205 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 CHSY3Q70JA7 882 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 C12orf50Q8NA57 414 aaPredicted RBP20.69■□□□□ 0.9
UPF1-207ENST00000599848 IL12RB2Q99665 862 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 SEMA6BQ9H3T3 888 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 PHTF1Q9UMS5 762 aa20.69■□□□□ 0.9
UPF1-207ENST00000599848 A0A0A0MRY4 1105 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 LGR5O75473 907 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 GLRA2P23416 452 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 GAD2Q05329 585 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 FGD3Q5JSP0 725 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 FAM43BQ6ZT52 329 aaPredicted RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 SPATA13Q96N96 652 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 TCF25Q9BQ70 676 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 SLC25A23Q9BV35 468 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 A0A096LPK6 155 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 H0YC42 278 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 ACADSP16219 412 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 FASP25445 335 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 PRAMEF19Q5SWL8 479 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 C10orf88Q9H8K7 445 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 FAM198AQ9UFP1 575 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 PPIEQ9UNP9 301 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 LTA4HP09960 611 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 PIK3R1P27986 724 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 FBXL16Q8N461 479 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 CDT1Q9H211 546 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 DDX4Q9NQI0 724 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 CFAP97Q9P2B7 532 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 VAV3Q9UKW4 847 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 MGAT1P26572 445 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 MIPP30301 263 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 SP2Q02086 613 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 SUZ12Q15022 739 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 RP9Q8TA86 221 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 ATG4AQ8WYN0 398 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 ACO2Q99798 780 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 CDHR5Q9HBB8 845 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 C1orf232A0A0U1RR37 186 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 RHPN2P1A8MT19 583 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 ATG7O95352 703 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 TSHRP16473 764 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 CALB2P22676 271 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 ZNF143P52747 638 aaPredicted RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 EPS8Q12929 822 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 TARBP2Q15633 366 aaKnown RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 ATXN7L2Q5T6C5 722 aaPredicted RBP20.68■□□□□ 0.9
UPF1-207ENST00000599848 STRADAQ7RTN6 431 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 IFNL1Q8IU54 200 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 SEC16BQ96JE7 1060 aa20.68■□□□□ 0.9
UPF1-207ENST00000599848 DISP2A7MBM2 1401 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 TAS2R50P59544 299 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 KYAT3Q6YP21 454 aaKnown RBP20.67■□□□□ 0.9
UPF1-207ENST00000599848 SHCBP1LQ9BZQ2 653 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 SLC9A8Q9Y2E8 581 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 RGS5O15539 181 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 CTDNEP1O95476 244 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 AKT2P31751 481 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 RFTN2Q52LD8 501 aaPredicted RBP20.67■□□□□ 0.9
UPF1-207ENST00000599848 SUN3Q8TAQ9 357 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 NACC2Q96BF6 587 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 C11orf49Q9H6J7 331 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 BATF3Q9NR55 127 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 HCN3Q9P1Z3 774 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 ASB3Q9Y575 518 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 STON1Q9Y6Q2 735 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 SLC25A14O95258 325 aaPredicted RBP20.67■□□□□ 0.9
UPF1-207ENST00000599848 SLC20A2Q08357 652 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 KATNAL2Q8IYT4 538 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 KYQ8NBH2 561 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 CD101Q93033 1021 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 SYT17Q9BSW7 474 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 RERGLQ9H628 205 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 NFKB1P19838 968 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 SOX10P56693 466 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 GTF2BQ00403 316 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 APLFQ8IW19 511 aaPredicted RBP20.67■□□□□ 0.9
UPF1-207ENST00000599848 HERVK_113Q902F9 699 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 KLC4Q9NSK0 619 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 EXD2Q9NVH0 621 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 RPS6KA6Q9UK32 745 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 ASF1AQ9Y294 204 aa20.67■□□□□ 0.9
UPF1-207ENST00000599848 F8VP50 259 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 CYP3A5P20815 502 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 KLK7P49862 253 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 BTBD9Q96Q07 612 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 ZFP14Q9HCL3 533 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 DYTNA2CJ06 578 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 CLDN4O14493 209 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 ASLP04424 464 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 ATP4AP20648 1035 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 ANXA8L1Q5VT79 327 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 LRRC74BQ6ZQY2 392 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 ZNF621Q6ZSS3 439 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 RASAL3Q86YV0 1011 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms