RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PCOLCE2Q9UKZ9 415 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 ZFR2Q9UPR6 939 aaKnown RBP12.38□□□□□ -0.43
LIG1-217ENST00000599165 CA5BQ9Y2D0 317 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 ASPMQ8IZT6 3477 aa12.38□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3DA0A087WVF3 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3IA0A087WXS9 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3EA0A087X179 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3KA0A087X1G2 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3FA6NER0 549 aaPredicted RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3LB9A6J9 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 RASA4BC9J798 803 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 KPNA3O00505 521 aaPredicted RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 RASA4O43374 803 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 CER1O95813 267 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3HP0C7X1 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 MIPP30301 263 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 MAT2AP31153 395 aaKnown RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 ZBED6P86452 979 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 FGL2Q14314 439 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 POLD3Q15054 466 aaPredicted RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 AFMIDQ63HM1 303 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3GQ6DHY5 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TXNRD3NBQ6F5E7 133 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3CQ6IPX1 549 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 PPP1R2P3Q6NXS1 205 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 IL27RAQ6UWB1 636 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 PARS2Q7L3T8 475 aaKnown RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 SPATS2Q86XZ4 545 aaKnown RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 ARHGAP12Q8IWW6 846 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 PLPP6Q8IY26 295 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TBC1D3Q8IZP1 549 aaPredicted RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 NPWQ8N729 165 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TMEM145Q8NBT3 493 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 CPLX3Q8WVH0 158 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 ARHGEF26Q96DR7 871 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 HDAC8Q9BY41 377 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 THAP2Q9H0W7 228 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TOR4AQ9NXH8 423 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 PCSK1NQ9UHG2 260 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 AP4E1Q9UPM8 1137 aa12.37□□□□□ -0.43
LIG1-217ENST00000599165 TDRD6O60522 2096 aaKnown RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 COL5A1P20908 1838 aaPredicted RBP12.37□□□□□ -0.43
LIG1-217ENST00000599165 ANKRD62A6NC57 917 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 RNGTTO60942 597 aaKnown RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 TMCC1O94876 653 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 PRNPP04156 253 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 SERPING1P05155 500 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 PTMSP20962 102 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 ITGB7P26010 798 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 HNRNPH3P31942 346 aaKnown RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 CASP14P31944 242 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 ETFBP38117 255 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 ABL2P42684 1182 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 NXPH1P58417 271 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 SIM1P81133 766 aaPredicted RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 IL9RQ01113 521 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 FOXC1Q12948 553 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 SERINC3Q13530 473 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 CYTH1Q15438 398 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 TEAD4Q15561 434 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 ZNF284Q2VY69 593 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 TMEM259Q4ZIN3 620 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 TDRD12Q587J7 1177 aaKnown RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 ATXN7L2Q5T6C5 722 aaPredicted RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 SEL1L3Q68CR1 1132 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 NAPEPLDQ6IQ20 393 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 LRSAM1Q6UWE0 723 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 ERN2Q76MJ5 926 aaKnown RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 CPNE8Q86YQ8 564 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 TP53INP2Q8IXH6 220 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 OR2AP1Q8NGE2 309 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 SERAC1Q96JX3 654 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 EPAS1Q99814 870 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 HEPHQ9BQS7 1158 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 SLC32A1Q9H598 525 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 DHX35Q9H5Z1 703 aaKnown RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 PREBQ9HCU5 417 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 MYO1AQ9UBC5 1043 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 HECAQ9UBI9 543 aaPredicted RBP12.36□□□□□ -0.43
LIG1-217ENST00000599165 LHX3Q9UBR4 397 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 GGT7Q9UJ14 662 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 ANGPTL2Q9UKU9 493 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 MFHAS1Q9Y4C4 1052 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 PCDHGB2Q9Y5G2 931 aa12.36□□□□□ -0.43
LIG1-217ENST00000599165 A0A1B0GTQ1 180 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 A0A1W2PQU0 124 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 GOLGA6L19H0YKK7 550 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 J3KR12 359 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 INSIG1O15503 277 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 FGF10O15520 208 aaPredicted RBP12.35□□□□□ -0.43
LIG1-217ENST00000599165 PCDHGA12O60330 932 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 DKK1O94907 266 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 GSRP00390 522 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 CYP1A2P05177 515 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 MYBL1P10243 752 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 ADRB3P13945 408 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 PRLRP16471 622 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 CD38P28907 300 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 DNA2P51530 1060 aa12.35□□□□□ -0.43
LIG1-217ENST00000599165 YBEYP58557 167 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms