RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PCDHA3Q9Y5H8 950 aa14.45□□□□□ -0.1
SHKBP1-217ENST00000598558 EML5Q05BV3 1969 aa14.45□□□□□ -0.1
SHKBP1-217ENST00000598558 VPS13AQ96RL7 3174 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 ZSCAN5CA6NGD5 496 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 ZNF487B1APH4 448 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 C10orf142B7Z368 130 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 ALOX15BO15296 676 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 DDX3YO15523 660 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 MAP3K13O43283 966 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 RNASEH1O60930 286 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 LEFTY1O75610 366 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 GSRP00390 522 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 CTNNA2P26232 953 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 CTNNA1P35221 906 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 RPL6Q02878 288 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 GALNT2Q10471 571 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 CNTN1Q12860 1018 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 BYSLQ13895 437 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 CCDC6Q16204 474 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 MYLK3Q32MK0 819 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 PGBD5Q8N414 524 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 TMIEQ8NEW7 156 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 OR2AP1Q8NGE2 309 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 GRIN3AQ8TCU5 1115 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 FAM131CQ96AQ9 280 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 HEPHQ9BQS7 1158 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 GPR174Q9BXC1 333 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 SMOC1Q9H4F8 434 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 C6orf106Q9H6K1 298 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 PARD6AQ9NPB6 346 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 TMEM74BQ9NUR3 256 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 SAE1Q9UBE0 346 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 IL36AQ9UHA7 158 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 EVLQ9UI08 416 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 SLCO1B1Q9Y6L6 691 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 FANCMQ8IYD8 2048 aa14.44□□□□□ -0.1
SHKBP1-217ENST00000598558 CHD5Q8TDI0 1954 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 hCG_1818297A0A087WSY0 165 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 GFRA3O60609 400 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 RNASEH2AO75792 299 aaKnown RBP14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 ZRANB2O95218 330 aaKnown RBP eCLIP14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 PYGMP11217 842 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 C5AR1P21730 350 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 MAOBP27338 520 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 GEMIN4P57678 1058 aaKnown RBP14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 TAS2R38P59533 333 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 RHOAP61586 193 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 DYNLT1P63172 113 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 IHHQ14623 411 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 LAIR1Q6GTX8 287 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 VSIG1Q86XK7 387 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 RFX6Q8HWS3 928 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 RCOR2Q8IZ40 523 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 GANCQ8TET4 914 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 CASKIN2Q8WXE0 1202 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 SPACA7Q96KW9 195 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 CALR3Q96L12 384 aaKnown RBP14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 ARRDC1-AS1Q9H2J1 176 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 ZDHHC6Q9H6R6 413 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 SP110Q9HB58 689 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 PPP2R2CQ9Y2T4 447 aa14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 ZFHX2Q9C0A1 2572 aaPredicted RBP14.43□□□□□ -0.1
SHKBP1-217ENST00000598558 BCLAF3A2AJT9 711 aaKnown RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 KPNA3O00505 521 aaPredicted RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 KRIT1O00522 736 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 RHOBTB1O94844 696 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 EPN2O95208 641 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 ADH1BP00325 375 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 PECAM1P16284 738 aaPredicted RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 ITPKAP23677 461 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 OXTRP30559 389 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 SERPINB6P35237 376 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 GARSP41250 739 aaKnown RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 DHPSP49366 369 aaPredicted RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 SNRPD1P62314 119 aaKnown RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 LBRQ14739 615 aaKnown RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 PIP5KL1Q5T9C9 394 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 AGBL4Q5VU57 503 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 KAZNQ674X7 775 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 SLC36A4Q6YBV0 504 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 ZNF662Q6ZS27 426 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 USP30Q70CQ3 517 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 LPCAT2Q7L5N7 544 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 RYBPQ8N488 228 aaPredicted RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 RNF10Q8N5U6 811 aaKnown RBP14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 EXD1Q8NHP7 514 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 TSGA13Q96PP4 275 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 LGMNQ99538 433 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 OMDQ99983 421 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 HEMGNQ9BXL5 484 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 EBF2Q9HAK2 575 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 LZTFL1Q9NQ48 299 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 AMFRQ9UKV5 643 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 SCML1Q9UN30 329 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 HEY1Q9Y5J3 304 aa14.42□□□□□ -0.1
SHKBP1-217ENST00000598558 METTL12A8MUP2 240 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 APOL1O14791 398 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 CST8O60676 142 aa14.41□□□□□ -0.1
SHKBP1-217ENST00000598558 POP4O95707 220 aaKnown RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms