RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 NR1I3Q14994 352 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 FILIP1LQ4L180 1135 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 CARD16Q5EG05 197 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 PLEKHA7Q6IQ23 1121 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 SCYL2Q6P3W7 929 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 LEKR1Q6ZMV7 388 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 CYP4V2Q6ZWL3 525 aaPredicted RBP13.3□□□□□ -0.28
LIG1-212ENST00000596549 ERN2Q76MJ5 926 aaKnown RBP13.3□□□□□ -0.28
LIG1-212ENST00000596549 TMC6Q7Z403 805 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 PRPF39Q86UA1 669 aaKnown RBP13.3□□□□□ -0.28
LIG1-212ENST00000596549 LUZP1Q86V48 1076 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 GATAD2AQ86YP4 633 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 ARFGAP1Q8N6T3 406 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 TMEM145Q8NBT3 493 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 OR6K2Q8NGY2 324 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 PEBP4Q96S96 227 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 MYOCQ99972 504 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 CNPY3Q9BT09 278 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 KLC2Q9H0B6 622 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 MAGEH1Q9H213 219 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 RETREG1Q9H6L5 497 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 ZDHHC6Q9H6R6 413 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 FZD3Q9NPG1 666 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 GPATCH2LQ9NWQ4 482 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 DMTF1Q9Y222 760 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 FARP1Q9Y4F1 1045 aaPredicted RBP13.3□□□□□ -0.28
LIG1-212ENST00000596549 PCDHB9Q9Y5E1 797 aa13.3□□□□□ -0.28
LIG1-212ENST00000596549 COL27A1Q8IZC6 1860 aaPredicted RBP13.29□□□□□ -0.28
LIG1-212ENST00000596549 CEP295Q9C0D2 2601 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 TPRP12270 2363 aaKnown RBP13.29□□□□□ -0.28
LIG1-212ENST00000596549 TDRD6O60522 2096 aaKnown RBP13.29□□□□□ -0.28
LIG1-212ENST00000596549 A0A1W2PQU0 124 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 SPINT1O43278 529 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 TRIM16O95361 564 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 ATXN1LP0C7T5 689 aaKnown RBP13.29□□□□□ -0.28
LIG1-212ENST00000596549 PRLRP16471 622 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 TNFAIP3P21580 790 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 ITGB7P26010 798 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 EPHB2P29323 1055 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 ABL2P42684 1182 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 GRK6P43250 576 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 RECQLP46063 649 aaPredicted RBP13.29□□□□□ -0.28
LIG1-212ENST00000596549 NEK3P51956 506 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 AIF1P55008 147 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 SLC20A2Q08357 652 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 CA9Q16790 459 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 ZNF284Q2VY69 593 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 TMEM259Q4ZIN3 620 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 SETMARQ53H47 684 aaPredicted RBP13.29□□□□□ -0.28
LIG1-212ENST00000596549 FIGNQ5HY92 759 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 SFMBT2Q5VUG0 894 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 SEL1L3Q68CR1 1132 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 DCUN1D2Q6PH85 259 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 RHBDD1Q8TEB9 315 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 KLK6Q92876 244 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 PPP1R16AQ96I34 528 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 VCPIP1Q96JH7 1222 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 HEPHQ9BQS7 1158 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 HDAC8Q9BY41 377 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 CAAP1Q9H8G2 361 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 GDF3Q9NR23 364 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 MSRB2Q9Y3D2 182 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 EPG5Q9HCE0 2579 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 MYLKQ15746 1914 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 SHROOM3Q8TF72 1996 aa13.29□□□□□ -0.28
LIG1-212ENST00000596549 CABIN1Q9Y6J0 2220 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 FAM221BA6H8Z2 402 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 ANKRD62A6NC57 917 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 WASH4PA8MWX3 477 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 TLR4O00206 839 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 KDELR3O43731 214 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 CREB3O43889 395 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 TMCC1O94876 653 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 SERPINC1P01008 464 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 SKILP12757 684 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 ADRB3P13945 408 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 PSMA2P25787 234 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 NUDT1P36639 197 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 DNA2P51530 1060 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 FGL2Q14314 439 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 POLD3Q15054 466 aaPredicted RBP13.28□□□□□ -0.28
LIG1-212ENST00000596549 HGSNATQ68CP4 663 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 GCNT7Q6ZNI0 430 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 KANSL1Q7Z3B3 1105 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 HORMAD1Q86X24 394 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 MFSD2AQ8NA29 543 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 NETO2Q8NC67 525 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 OR2AP1Q8NGE2 309 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 SAP25Q8TEE9 199 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 ISG20Q96AZ6 181 aaKnown RBP13.28□□□□□ -0.28
LIG1-212ENST00000596549 HMCESQ96FZ2 354 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 EPAS1Q99814 870 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 SNRNP25Q9BV90 132 aaKnown RBP13.28□□□□□ -0.28
LIG1-212ENST00000596549 PDFQ9HBH1 243 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 DYRK4Q9NR20 520 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 PARVAQ9NVD7 372 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 GGT7Q9UJ14 662 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 AP4E1Q9UPM8 1137 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 ITM2BQ9Y287 266 aa13.28□□□□□ -0.28
LIG1-212ENST00000596549 KNL1Q8NG31 2342 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms