RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 SGK2Q9HBY8 427 aa11.35□□□□□ -0.59
VRK3-210ENST00000596121 HECAQ9UBI9 543 aaPredicted RBP11.35□□□□□ -0.59
VRK3-210ENST00000596121 LHX3Q9UBR4 397 aa11.35□□□□□ -0.59
VRK3-210ENST00000596121 FZD4Q9ULV1 537 aa11.35□□□□□ -0.59
VRK3-210ENST00000596121 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.35□□□□□ -0.59
VRK3-210ENST00000596121 DUSP10Q9Y6W6 482 aa11.35□□□□□ -0.59
VRK3-210ENST00000596121 PI4KAP42356 2102 aa11.35□□□□□ -0.59
VRK3-210ENST00000596121 LNP1A1A4G5 178 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 C3orf70A6NLC5 250 aaPredicted RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 DFFAO00273 331 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 WNT9AO14904 365 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 MUSKO15146 869 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 BUB1BO60566 1050 aaPredicted RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 LEFTY1O75610 366 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 GJB3O75712 270 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 FSBPO95073 299 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 PEX11BO96011 259 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 ARHGAP25P42331 645 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 RGRP47804 291 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 ZNF135P52742 658 aaPredicted RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 ADPRHP54922 357 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 PPP2CBP62714 309 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 PPP2CAP67775 309 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 BNC1Q01954 994 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 KRT81Q14533 505 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 HADHQ16836 314 aaKnown RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 RSPO4Q2I0M5 234 aaPredicted RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 MYLK3Q32MK0 819 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 INO80DQ53TQ3 878 aaPredicted RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 ZNF354CQ86Y25 554 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 RHOT2Q8IXI1 618 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 PLPP6Q8IY26 295 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 GPR161Q8N6U8 529 aaKnown RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 PQLC3Q8N755 202 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 ACRBPQ8NEB7 543 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 FOXJ1Q92949 421 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 FAF2Q96CS3 445 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 HEPHQ9BQS7 1158 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 LACRTQ9GZZ8 138 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 CAPN10Q9HC96 672 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 IL36AQ9UHA7 158 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 EIF2B4Q9UI10 523 aaKnown RBP11.34□□□□□ -0.59
VRK3-210ENST00000596121 HPCAL4Q9UM19 191 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 NCKAP1Q9Y2A7 1128 aa11.34□□□□□ -0.59
VRK3-210ENST00000596121 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 ZSCAN5CA6NGD5 496 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 FAM47DPA6NHR8 397 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 ARHGAP42A6NI28 874 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 MEI4A8MW99 385 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 KPNA3O00505 521 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 CDX4O14627 284 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 KHNYNO15037 678 aaKnown RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 PLRG1O43660 514 aaKnown RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 GSRP00390 522 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 COMTP21964 271 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 KDELR1P24390 212 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 CYLC1P35663 651 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 ARL4AP40617 200 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 HADHBP55084 474 aaKnown RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 LMNB2Q03252 620 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 ANKRD20A8PQ5CZ79 823 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 TRIM61Q5EBN2 209 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 FAM46CQ5VWP2 391 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 KIAA0895LQ68EN5 471 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 NCBP2-AS2Q69YL0 99 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 SLC23A3Q6PIS1 610 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 TMCO3Q6UWJ1 677 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 DSG4Q86SJ6 1040 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 RGL4Q8IZJ4 473 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 ZCCHC9Q8N567 271 aaKnown RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 KCTD6Q8NC69 237 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 OR2AP1Q8NGE2 309 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 OR2I1PQ8NGU4 316 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 OR2T34Q8NGX1 318 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 OR14C36Q8NHC7 312 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 LRRN4Q8WUT4 740 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 EXOC2Q96KP1 924 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 BAG1Q99933 345 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 PCED1AQ9H1Q7 454 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 ZDHHC6Q9H6R6 413 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 IMPACTQ9P2X3 320 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 UBA2Q9UBT2 640 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 EVLQ9UI08 416 aaPredicted RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 IPO11Q9UI26 975 aaKnown RBP11.33□□□□□ -0.6
VRK3-210ENST00000596121 ALG6Q9Y672 507 aa11.33□□□□□ -0.6
VRK3-210ENST00000596121 DOCK9Q9BZ29 2069 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 CACNA1EQ15878 2313 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 TTC24A2A3L6 582 aaPredicted RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 C1QTNF3-AMACRE9PGA6 284 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 KRIT1O00522 736 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SPINT1O43278 529 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 MFSD11O43934 449 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 MAFKO60675 156 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 MAP3K6O95382 1288 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 PRNPP04156 253 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 SERPINF2P08697 491 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 KRT7P08729 469 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 ITIH2P19823 946 aa11.32□□□□□ -0.6
VRK3-210ENST00000596121 RECQLP46063 649 aaPredicted RBP11.32□□□□□ -0.6
VRK3-210ENST00000596121 MARCKSL1P49006 195 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms