RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 PILRBQ9UKJ0 227 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 TFR2Q9UP52 801 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 ALG6Q9Y672 507 aa15.29■□□□□ 0.04
UPF1-202ENST00000594243 LRRC72A6NJI9 287 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 MEI4A8MW99 385 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 KPNA3O00505 521 aaPredicted RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 BUB1BO60566 1050 aaPredicted RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 LEFTY1O75610 366 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 PALMO75781 387 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 TMCC1O94876 653 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 CTSLP07711 333 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 ITPKAP23677 461 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 CCNHP51946 323 aaPredicted RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 NAP1L1P55209 391 aaKnown RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 RHOAP61586 193 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 CYTH1Q15438 398 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 DCAF12L1Q5VU92 463 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 VSIG1Q86XK7 387 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 LRRC49Q8IUZ0 686 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 C12orf50Q8NA57 414 aaPredicted RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 CHST14Q8NCH0 376 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 OR14C36Q8NHC7 312 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 CEP76Q8TAP6 659 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 MAK16Q9BXY0 300 aaKnown RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 TM6SF2Q9BZW4 377 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 KDM4CQ9H3R0 1056 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 PDFQ9HBH1 243 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 PARD6AQ9NPB6 346 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 ETNK2Q9NVF9 386 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 KLHL11Q9NVR0 708 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 SERGEFQ9UGK8 458 aa15.28■□□□□ 0.04
UPF1-202ENST00000594243 IPO11Q9UI26 975 aaKnown RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 REXO2Q9Y3B8 237 aaKnown RBP15.28■□□□□ 0.04
UPF1-202ENST00000594243 FAM47DPA6NHR8 397 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 ZNF487B1APH4 448 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 KHNYNO15037 678 aaKnown RBP15.27■□□□□ 0.04
UPF1-202ENST00000594243 PJA2O43164 708 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 IGSF6O95976 241 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 TNNT1P13805 278 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 GNSP15586 552 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 DRD3P35462 400 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 KIF5AQ12840 1032 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 PAFAH1B3Q15102 231 aaKnown RBP15.27■□□□□ 0.04
UPF1-202ENST00000594243 CCDC6Q16204 474 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 MYLK3Q32MK0 819 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 TMCO4Q5TGY1 634 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 PEAR1Q5VY43 1037 aaPredicted RBP15.27■□□□□ 0.04
UPF1-202ENST00000594243 C11orf63Q6NUN7 778 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 PRR23CQ6ZRP0 262 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 DAAM2Q86T65 1068 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 ACRBPQ8NEB7 543 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 CCDC112Q8NEF3 446 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 OR2T34Q8NGX1 318 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 PCDH19Q8TAB3 1148 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 GRIN3AQ8TCU5 1115 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 NSMCE1Q8WV22 266 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 DNASE2BQ8WZ79 361 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 RAPGEF5Q92565 580 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 FAM131CQ96AQ9 280 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 FAF2Q96CS3 445 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 GDAP1L1Q96MZ0 367 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 ZNF599Q96NL3 588 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 RNF157Q96PX1 679 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 OSBPL1AQ9BXW6 950 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 C6orf106Q9H6K1 298 aaPredicted RBP15.27■□□□□ 0.04
UPF1-202ENST00000594243 TMEM74BQ9NUR3 256 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 SUSD2Q9UGT4 822 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 TPX2Q9ULW0 747 aaKnown RBP15.27■□□□□ 0.04
UPF1-202ENST00000594243 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.27■□□□□ 0.04
UPF1-202ENST00000594243 WASF2Q9Y6W5 498 aa15.27■□□□□ 0.04
UPF1-202ENST00000594243 EP300Q09472 2414 aaPredicted RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 CHD5Q8TDI0 1954 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3DA0A087WVF3 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3IA0A087WXS9 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3EA0A087X179 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3KA0A087X1G2 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 LRRD1A4D1F6 860 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 RCCD1A6NED2 376 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3FA6NER0 549 aaPredicted RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3LB9A6J9 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 KRIT1O00522 736 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 PSTPIP1O43586 416 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3HP0C7X1 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 RENBPP51606 427 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 METAP1P53582 386 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 ADPRHP54922 357 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 LMNB2Q03252 620 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 CNTN1Q12860 1018 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 GRM3Q14832 879 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 IFI16Q16666 785 aaKnown RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 DUOXA1Q1HG43 343 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 POM121L1PQ3SYA9 428 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 KIAA0895LQ68EN5 471 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3GQ6DHY5 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3CQ6IPX1 549 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TBC1D3Q8IZP1 549 aaPredicted RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 ATPAF2Q8N5M1 289 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 NETO2Q8NC67 525 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TPCN2Q8NHX9 752 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms