RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 DMTF1Q9Y222 760 aa15.56■□□□□ 0.08
TRIM28-203ENST00000593582 LUC7L2Q9Y383 392 aaKnown RBP15.56■□□□□ 0.08
TRIM28-203ENST00000593582 EIF3CLB5ME19 914 aaKnown RBP15.55■□□□□ 0.08
TRIM28-203ENST00000593582 KCNK3O14649 394 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 FLRT2O43155 660 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 BUB1O43683 1085 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 PRPSAP2O60256 369 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 CD160O95971 181 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 SERPING1P05155 500 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 CCT8P50990 548 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 YBEYP58557 167 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-203ENST00000593582 TAS2R38P59533 333 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ZBED6P86452 979 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ZNF423Q2M1K9 1284 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 PARP15Q460N3 678 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ERMARDQ5T6L9 678 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 HGSNATQ68CP4 663 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 NAPEPLDQ6IQ20 393 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 NEK5Q6P3R8 708 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ERN2Q76MJ5 926 aaKnown RBP15.55■□□□□ 0.08
TRIM28-203ENST00000593582 RYBPQ8N488 228 aaPredicted RBP15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ARRDC3Q96B67 414 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 EIF3CQ99613 913 aaKnown RBP15.55■□□□□ 0.08
TRIM28-203ENST00000593582 NCAPGQ9BPX3 1015 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 TM6SF2Q9BZW4 377 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ISCUQ9H1K1 167 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 NOL6Q9H6R4 1146 aaKnown RBP15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ZDHHC6Q9H6R6 413 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ARHGAP20Q9P2F6 1191 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 MYO1AQ9UBC5 1043 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 PCSK1NQ9UHG2 260 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ACTL7AQ9Y615 435 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 WASF2Q9Y6W5 498 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 ASPMQ8IZT6 3477 aa15.55■□□□□ 0.08
TRIM28-203ENST00000593582 WASH4PA8MWX3 477 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 H0Y8X5 98 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 TLR4O00206 839 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 WNT9AO14904 365 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 RNGTTO60942 597 aaKnown RBP15.54■□□□□ 0.08
TRIM28-203ENST00000593582 WNT1P04628 370 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 ITGB7P26010 798 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 NEK3P51956 506 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 SNRPD1P62314 119 aaKnown RBP15.54■□□□□ 0.08
TRIM28-203ENST00000593582 FAM193AP78312 1265 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 STAT4Q14765 748 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 FBXL19Q6PCT2 694 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 LEKR1Q6ZMV7 388 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 DBX2Q6ZNG2 339 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 UMODL1-AS1Q8N2C9 162 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 OR2AP1Q8NGE2 309 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 RHBDD1Q8TEB9 315 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 CASKIN2Q8WXE0 1202 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 LRIG1Q96JA1 1093 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 TRIM7Q9C029 511 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 DHX35Q9H5Z1 703 aaKnown RBP15.54■□□□□ 0.08
TRIM28-203ENST00000593582 GDF3Q9NR23 364 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 GPATCH2LQ9NWQ4 482 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 PCOLCE2Q9UKZ9 415 aa15.54■□□□□ 0.08
TRIM28-203ENST00000593582 A0A1W2PQU0 124 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 A0A1W2PR77 199 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 RASA4BC9J798 803 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 PRAMEF26H0Y7S4 382 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 RNF103O00237 685 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 EEF2KO00418 725 aaKnown RBP15.53■□□□□ 0.08
TRIM28-203ENST00000593582 DAPK3O43293 454 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 RASA4O43374 803 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 PCDHGA12O60330 932 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 MAGEC1O60732 1142 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 CBFA2T3O75081 653 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 PCDH8O95206 1070 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 TRIM16O95361 564 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 POP4O95707 220 aaKnown RBP15.53■□□□□ 0.08
TRIM28-203ENST00000593582 GSRP00390 522 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 MIPP30301 263 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 GRK6P43250 576 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 OVGP1Q12889 678 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 IQCHQ86VS3 1027 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 HORMAD1Q86X24 394 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 PSTKQ8IV42 348 aaKnown RBP15.53■□□□□ 0.08
TRIM28-203ENST00000593582 ARFGAP1Q8N6T3 406 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 MFSD2AQ8NA29 543 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 OR6K2Q8NGY2 324 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 HMCESQ96FZ2 354 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 ELF4Q99607 663 aaPredicted RBP15.53■□□□□ 0.08
TRIM28-203ENST00000593582 CDC6Q99741 560 aa15.53■□□□□ 0.08
TRIM28-203ENST00000593582 SNRNP25Q9BV90 132 aaKnown RBP15.53■□□□□ 0.08
TRIM28-203ENST00000593582 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.53■□□□□ 0.082e-11■■■■■ 40.9
TRIM28-203ENST00000593582 A0A1B0GTQ1 180 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 KRIT1O00522 736 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 SLC31A1O15431 190 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 LRCH4O75427 683 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 TMCC1O94876 653 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 GYPCP04921 128 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 ADRB3P13945 408 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 ARRB1P49407 418 aaPredicted RBP15.52■□□□□ 0.08
TRIM28-203ENST00000593582 NDST2P52849 883 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 IL9RQ01113 521 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 SERINC3Q13530 473 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 ACAP1Q15027 740 aa15.52■□□□□ 0.08
TRIM28-203ENST00000593582 NFKBIBQ15653 356 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms