RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRAPPC5Q8IUR0 188 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 OR6K2Q8NGY2 324 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ALG3Q92685 438 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 KLF6Q99612 283 aaPredicted RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 SMOC2Q9H3U7 446 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 TMPRSS4Q9NRS4 437 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 REXO2Q9Y3B8 237 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 RRP15Q9Y3B9 282 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 TSC22D4Q9Y3Q8 395 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 M0QZQ0 153 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 POP4O95707 220 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 PTPN3P26045 913 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CNTFP26441 200 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 RPS24P62847 133 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 ELP6Q0PNE2 266 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 NOMO1Q15155 1222 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 TEX44Q53QW1 395 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 SCARA3Q6AZY7 606 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ZNF470Q6ECI4 717 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 UBE2Q1Q7Z7E8 422 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 SLC26A11Q86WA9 606 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 OR52K1Q8NGK4 314 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 FAM136AQ96C01 138 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 MTBPQ96DY7 904 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 DTNBP1Q96EV8 351 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 MYO19Q96H55 970 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 C17orf80Q9BSJ5 609 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ASB8Q9H765 288 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ABCB8Q9NUT2 735 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 EVLQ9UI08 416 aaPredicted RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 ARHGAP10A1A4S6 786 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 TMEM247A6NEH6 219 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 RNASEH2AO75792 299 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 ELFN1P0C7U0 828 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 PSMD8P48556 350 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CAMK2GQ13555 558 aaPredicted RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 APTXQ7Z2E3 356 aaKnown RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 CIR1Q86X95 450 aaPredicted RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 CREG2Q8IUH2 290 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ARID3BQ8IVW6 561 aaPredicted RBP9.97□□□□□ -0.81
LIG3-216ENST00000593099 ACDQ96AP0 544 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 OTUB2Q96DC9 234 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 FEM1CQ96JP0 617 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 LRRC19Q9H756 370 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 FZD10Q9ULW2 581 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ERVW-1Q9UQF0 538 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 ACOT9Q9Y305 439 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 WNT6Q9Y6F9 365 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 CAPN7Q9Y6W3 813 aa9.97□□□□□ -0.81
LIG3-216ENST00000593099 MFSD11O43934 449 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 DGKIO75912 1065 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 ZSCAN5DPP0CG00 497 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 KELP23276 732 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 CCNCP24863 283 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 LIG3P49916 1009 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 GBE1Q04446 702 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 PTP4A2Q12974 167 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 NEPROQ6NW34 567 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 LINGO4Q6UY18 593 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 C15orf39Q6ZRI6 1047 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 ALLCQ8N6M5 410 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 NETO2Q8NC67 525 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 YIPF2Q9BWQ6 316 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 CDC42EP4Q9H3Q1 356 aaKnown RBP9.96□□□□□ -0.81
LIG3-216ENST00000593099 GPAMQ9HCL2 828 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 SNX10Q9Y5X0 201 aa9.96□□□□□ -0.81
LIG3-216ENST00000593099 DDX60LQ5H9U9 1706 aaKnown RBP9.96□□□□□ -0.81
LIG3-216ENST00000593099 A0A0G2JND7 137 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 H3BMM5 538 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 TGM5O43548 720 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 LPOP22079 712 aaPredicted RBP9.96□□□□□ -0.82
LIG3-216ENST00000593099 GP5P40197 560 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 KCNQ1P51787 676 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 SEC13P55735 322 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 AP1S1P61966 158 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 POU4F1Q01851 419 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 BOP1Q14137 746 aaKnown RBP9.96□□□□□ -0.82
LIG3-216ENST00000593099 DSC3Q14574 896 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 FSCBQ5H9T9 825 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 HFE2Q6ZVN8 426 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 SZRD1Q7Z422 152 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 PYROXD2Q8N2H3 581 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 PLD5Q8N7P1 536 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 SGF29Q96ES7 293 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 HEPHQ9BQS7 1158 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 OSBPL2Q9H1P3 480 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 TAS2R13Q9NYV9 303 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 RNF112Q9ULX5 631 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 COG5Q9UP83 839 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 TRIM33Q9UPN9 1127 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 COL4A1P02462 1669 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 DOCK2Q92608 1830 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 LRRC72A6NJI9 287 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 DIAPH2O60879 1101 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 RPN2P04844 631 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 CTPS1P17812 591 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 PRELID2Q8N945 189 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 HERVK_113Q902F9 699 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 SPACA7Q96KW9 195 aa9.96□□□□□ -0.82
LIG3-216ENST00000593099 CEP295NLQ96MC4 621 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms