RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 SPANXN3Q5MJ09 141 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ATAT1Q5SQI0 421 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 STXBP5Q5T5C0 1151 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ANKRD22Q5VYY1 191 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 BBS7Q8IWZ6 715 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ZNF683Q8IZ20 524 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 AHI1Q8N157 1196 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 NDUFAF2Q8N183 169 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 CPA6Q8N4T0 437 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP6.29□□□□□ -1.4
LIG3-206ENST00000586058 EFHBQ8N7U6 833 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 NETO2Q8NC67 525 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 TSEN2Q8NCE0 465 aaKnown RBP6.29□□□□□ -1.4
LIG3-206ENST00000586058 GSDMBQ8TAX9 411 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 BPIFB1Q8TDL5 484 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 LRRN4Q8WUT4 740 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 MAML1Q92585 1016 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 BHMTQ93088 406 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ATP6V1G3Q96LB4 118 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 SLC22A12Q96S37 553 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 CYTH2Q99418 400 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 SLC46A2Q9BY10 475 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ZMYND15Q9H091 742 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 SLC25A51Q9H1U9 297 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ADAM7Q9H2U9 754 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 SEMA4AQ9H3S1 761 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 ZNF576Q9H609 170 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 PPANQ9NQ55 473 aaKnown RBP6.29□□□□□ -1.4
LIG3-206ENST00000586058 NDFIP2Q9NV92 336 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 NSMCE4AQ9NXX6 385 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 OBP2AQ9NY56 170 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 GDE1Q9NZC3 331 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 SENP1Q9P0U3 644 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 VPS18Q9P253 973 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 PSMC3IPQ9P2W1 217 aaPredicted RBP6.29□□□□□ -1.4
LIG3-206ENST00000586058 TBC1D30Q9Y2I9 924 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 COL4A3Q01955 1670 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 CEP350Q5VT06 3117 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 DOCK8Q8NF50 2099 aa6.29□□□□□ -1.4
LIG3-206ENST00000586058 IQANK1A0A1B0GTG1 560 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 CXorf51AA0A1B0GTR3 108 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 MAGEB16A2A368 324 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 HEATR9A2RTY3 570 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 A6NNZ2 444 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 POC1B-GALNT4F8VUJ3 575 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SCAMP3O14828 347 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 PFDN6O15212 129 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 PMPCBO75439 489 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 KRT37O76014 449 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SUN1O94901 812 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 AGTP01019 485 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 KLKB1P03952 638 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 FGF1P05230 155 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 KRT15P19012 456 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 POLR2EP19388 210 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 HLA-DPA1P20036 260 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 HOXD9P28356 352 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 WEE1P30291 646 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ACVRL1P37023 503 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 CSKP41240 450 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 CCR2P41597 374 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 CD86P42081 329 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 MSH2P43246 934 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 IRAK1P51617 712 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 EPHB1P54762 984 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 NRLP54845 237 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SESN2P58004 480 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 ST8SIA6P61647 398 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 AP1S1P61966 158 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 NTHL1P78549 312 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 PDE1BQ01064 536 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 KCNC4Q03721 635 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 GAD2Q05329 585 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SLC20A2Q08357 652 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ZNF844Q08AG5 666 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ILF2Q12905 390 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 SEPT6Q14141 434 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 GRM3Q14832 879 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 PDGFRLQ15198 375 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 TMED2Q15363 201 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ZNF77Q15935 545 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SEPT7Q16181 437 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 SLC5A9Q2M3M2 681 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 TUBB8Q3ZCM7 444 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 INO80DQ53TQ3 878 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 TCEAL5Q5H9L2 206 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 AGBL2Q5U5Z8 902 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ANKRD54Q6NXT1 300 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ARHGAP36Q6ZRI8 547 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 C3orf62Q6ZUJ4 267 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 MTSS1LQ765P7 747 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 NLRP9Q7RTR0 991 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SPRED2Q7Z698 418 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 GPR149Q86SP6 731 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 RASSF3Q86WH2 238 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ARID3BQ8IVW6 561 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 CTAGE3PQ8IX95 158 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 OR7D4Q8NG98 312 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms