RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 DNA2P51530 1060 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 CYP4F3Q08477 520 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 DNAJC3Q13217 504 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 NLRP14Q86W24 1093 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 TMEM145Q8NBT3 493 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 HDAC8Q9BY41 377 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 RETREG1Q9H6L5 497 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 DYRK4Q9NR20 520 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 FCF1Q9Y324 198 aaKnown RBP20.88■□□□□ 0.93
SHMT1-209ENST00000582653 PKD1L2Q7Z442 2459 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 DOCK4Q8N1I0 1966 aa20.88■□□□□ 0.93
SHMT1-209ENST00000582653 TP53BP1Q12888 1972 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-209ENST00000582653 A0A1W2PQU0 124 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 SIGLEC16A6NMB1 481 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 SLC31A1O15431 190 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 LEFTY1O75610 366 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 RFPL3O75679 317 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 LRIG2O94898 1065 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 CALB1P05937 261 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 PLEKP08567 350 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-209ENST00000582653 JUPP14923 745 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 PRLRP16471 622 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 RHOQP17081 205 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 RECQLP46063 649 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-209ENST00000582653 GSCP56915 257 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-209ENST00000582653 NRG1Q02297 640 aaPredicted RBP20.87■□□□□ 0.93
SHMT1-209ENST00000582653 ANO6Q4KMQ2 910 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 C19orf48Q6RUI8 117 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 LEKR1Q6ZMV7 388 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 ERN2Q76MJ5 926 aaKnown RBP20.87■□□□□ 0.93
SHMT1-209ENST00000582653 MON1BQ7L1V2 547 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 HORMAD1Q86X24 394 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 PYROXD2Q8N2H3 581 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 C3orf20Q8ND61 904 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 MYOCQ99972 504 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 CEP44Q9C0F1 390 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 NEU3Q9UQ49 428 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 RAXQ9Y2V3 346 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 WASF2Q9Y6W5 498 aa20.87■□□□□ 0.93
SHMT1-209ENST00000582653 CXorf51AA0A1B0GTR3 108 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 TCRBV5S1A1TA0A578 114 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 CCP110O43303 1012 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 CKMT2P17540 419 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 ACADVLP49748 655 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 RPL7AP62424 266 aaKnown RBP20.86■□□□□ 0.93
SHMT1-209ENST00000582653 ILKQ13418 452 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 ZNF284Q2VY69 593 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 CARD16Q5EG05 197 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 SCYL2Q6P3W7 929 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 ARHGEF2Q92974 986 aaKnown RBP20.86■□□□□ 0.93
SHMT1-209ENST00000582653 TMEM248Q9NWD8 314 aa20.86■□□□□ 0.93
SHMT1-209ENST00000582653 THEGLP0DJG4 465 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 CCNHP51946 323 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-209ENST00000582653 C1QBPQ07021 282 aaKnown RBP20.85■□□□□ 0.93
SHMT1-209ENST00000582653 ACAD10Q6JQN1 1059 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 DNAJC24Q6P3W2 148 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 IRF2BP2Q7Z5L9 587 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 SLFN11Q7Z7L1 901 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 PLPP6Q8IY26 295 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 SLC25A45Q8N413 288 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 PCDH20Q8N6Y1 951 aaKnown RBP20.85■□□□□ 0.93
SHMT1-209ENST00000582653 TBC1D31Q96DN5 1066 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 PPP1R16AQ96I34 528 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 MCEEQ96PE7 176 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 HEPHQ9BQS7 1158 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 TM6SF2Q9BZW4 377 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 FZD3Q9NPG1 666 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 SCUBE2Q9NQ36 999 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 KLHL11Q9NVR0 708 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 TAS2R14Q9NYV8 317 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 ZFR2Q9UPR6 939 aaKnown RBP20.85■□□□□ 0.93
SHMT1-209ENST00000582653 HS3ST3A1Q9Y663 406 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 CELSR3Q9NYQ7 3312 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 DOCK9Q9BZ29 2069 aa20.85■□□□□ 0.93
SHMT1-209ENST00000582653 ADAMTS20P59510 1910 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 PCDH8O95206 1070 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 FERP16591 822 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 HNRNPA2B1P22626 353 aaKnown RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 GKP32189 559 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 HNF1BP35680 557 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 MAPKAPK2P49137 400 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 SEL1L3Q68CR1 1132 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 CACTIN-AS1Q8N1I8 211 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 OR6K2Q8NGY2 324 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 FAM174AQ8TBP5 190 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 HNRNPLLQ8WVV9 542 aaKnown RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 NTAN1Q96AB6 310 aa20.84■□□□□ 0.93
SHMT1-209ENST00000582653 ISG20Q96AZ6 181 aaKnown RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 NAT10Q9H0A0 1025 aaKnown RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 RTN4Q9NQC3 1192 aaKnown RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 HECAQ9UBI9 543 aaPredicted RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 ANKRD11Q6UB99 2663 aaPredicted RBP20.84■□□□□ 0.93
SHMT1-209ENST00000582653 NBEAQ8NFP9 2946 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 TMCO5BA8MYB1 307 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 AKT2P31751 481 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 L1CAMP32004 1257 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 ZNF143P52747 638 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-209ENST00000582653 ZNF211Q13398 564 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-209ENST00000582653 COL28A1Q2UY09 1125 aa20.83■□□□□ 0.93
SHMT1-209ENST00000582653 PPP1R15BQ5SWA1 713 aa20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms